miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 72614 0.66 0.878432
Target:  5'- aCCGGGcggGCGGGCgcaGGG-GCGGCUu -3'
miRNA:   3'- gGGCUCa--UGCUCGag-CCCgCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 104179 0.66 0.878432
Target:  5'- gCCGcGcGCGGGUcgUCGGGCGgGACg- -3'
miRNA:   3'- gGGCuCaUGCUCG--AGCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 97625 0.66 0.878432
Target:  5'- -gCGGGcggaGCGGGCggagCGGGCGCGGgUGc -3'
miRNA:   3'- ggGCUCa---UGCUCGa---GCCCGCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 101565 0.66 0.878432
Target:  5'- gCCGAGgAUGcGCUCGGcGCGCGcCg- -3'
miRNA:   3'- gGGCUCaUGCuCGAGCC-CGCGUuGau -5'
23763 5' -56.7 NC_005261.1 + 67053 0.66 0.878432
Target:  5'- gCCCGuGUagGCGGGCgcgcgCGGGgGCucGCUc -3'
miRNA:   3'- -GGGCuCA--UGCUCGa----GCCCgCGu-UGAu -5'
23763 5' -56.7 NC_005261.1 + 119794 0.66 0.871195
Target:  5'- aCCGcAGcGCgGAGCU-GGGCGgCAACUAc -3'
miRNA:   3'- gGGC-UCaUG-CUCGAgCCCGC-GUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 132528 0.66 0.871195
Target:  5'- -aCGAGUACGAGCgcgcccUCGcGCGCGAg-- -3'
miRNA:   3'- ggGCUCAUGCUCG------AGCcCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 91156 0.66 0.871195
Target:  5'- gCCCG---GCGAGUggccCGGGCgGCAGCUc -3'
miRNA:   3'- -GGGCucaUGCUCGa---GCCCG-CGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 115825 0.66 0.871195
Target:  5'- -aCGcGGUGCGccAGCUUGGGCGCGu--- -3'
miRNA:   3'- ggGC-UCAUGC--UCGAGCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 12302 0.66 0.871195
Target:  5'- gCCgCGGGcACGGGCgcguagccggCGGGCGCGcGCUu -3'
miRNA:   3'- -GG-GCUCaUGCUCGa---------GCCCGCGU-UGAu -5'
23763 5' -56.7 NC_005261.1 + 127789 0.66 0.871195
Target:  5'- gCUCGAGcgGCGGGC-CGGcGcCGCGGCg- -3'
miRNA:   3'- -GGGCUCa-UGCUCGaGCC-C-GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 27466 0.66 0.863744
Target:  5'- cCCCGcGGgGCGGGCaggcccucccCGGGCGCAcCUGg -3'
miRNA:   3'- -GGGC-UCaUGCUCGa---------GCCCGCGUuGAU- -5'
23763 5' -56.7 NC_005261.1 + 32141 0.66 0.863744
Target:  5'- aCCGc-UGgGGGCUCGGcGCGCcGCUGc -3'
miRNA:   3'- gGGCucAUgCUCGAGCC-CGCGuUGAU- -5'
23763 5' -56.7 NC_005261.1 + 128800 0.66 0.856084
Target:  5'- gCCCGGGcccgcgGCgGGGCUCGcGCuGCGGCUGa -3'
miRNA:   3'- -GGGCUCa-----UG-CUCGAGCcCG-CGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 28577 0.66 0.848221
Target:  5'- gCCGAGgcgcGCGAGCgccggCGGGcCGCccgcgccgAGCUGg -3'
miRNA:   3'- gGGCUCa---UGCUCGa----GCCC-GCG--------UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 3864 0.66 0.848221
Target:  5'- gCCGcgcGGccgGCGAGCaCGGcGCGCAGCUc -3'
miRNA:   3'- gGGC---UCa--UGCUCGaGCC-CGCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 3540 0.66 0.848221
Target:  5'- gCCUcGGcGCGcAGCgcggCGGGCGCGGCg- -3'
miRNA:   3'- -GGGcUCaUGC-UCGa---GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 89087 0.66 0.848221
Target:  5'- aCCGGcUGCG-GCcCGGGCGC-GCUGg -3'
miRNA:   3'- gGGCUcAUGCuCGaGCCCGCGuUGAU- -5'
23763 5' -56.7 NC_005261.1 + 13240 0.66 0.847424
Target:  5'- cCCCGAGgcCGAgGC-CGGcGCGCcgucaaaGACUAg -3'
miRNA:   3'- -GGGCUCauGCU-CGaGCC-CGCG-------UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 103912 0.67 0.840163
Target:  5'- aCCCGcGccGCcAGgUCGGGCGCGGCg- -3'
miRNA:   3'- -GGGCuCa-UGcUCgAGCCCGCGUUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.