miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 22677 0.7 0.640207
Target:  5'- gCCCGAGUGCcgccgGGGgaCGGGCccgGCGACg- -3'
miRNA:   3'- -GGGCUCAUG-----CUCgaGCCCG---CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 70569 0.7 0.640207
Target:  5'- gCCGcGaa-GAGCUCGGGCGCGAg-- -3'
miRNA:   3'- gGGCuCaugCUCGAGCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 118388 0.7 0.629972
Target:  5'- gCCCGAGgcgcugGCG-GCcgCGGGCGCcGCa- -3'
miRNA:   3'- -GGGCUCa-----UGCuCGa-GCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 51208 0.69 0.731017
Target:  5'- cCCCGGGcGCGcuGCUgcUGGGCGCG-CUAg -3'
miRNA:   3'- -GGGCUCaUGCu-CGA--GCCCGCGUuGAU- -5'
23763 5' -56.7 NC_005261.1 + 2824 0.69 0.731017
Target:  5'- gCCCcAGccCGAGCUCGGGCgGCAGg-- -3'
miRNA:   3'- -GGGcUCauGCUCGAGCCCG-CGUUgau -5'
23763 5' -56.7 NC_005261.1 + 123159 0.69 0.721148
Target:  5'- -aCGAGggcgggGCGGGCgcgCGGGCGUgguGGCUGg -3'
miRNA:   3'- ggGCUCa-----UGCUCGa--GCCCGCG---UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 97660 0.69 0.720157
Target:  5'- aCCUGGGgggccgGCGuccgcggGGCUUGGGCGgGGCUGc -3'
miRNA:   3'- -GGGCUCa-----UGC-------UCGAGCCCGCgUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 118913 0.69 0.711203
Target:  5'- gUCUGGGUcCGGcGCcgCGGGCGCGGCg- -3'
miRNA:   3'- -GGGCUCAuGCU-CGa-GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 97568 0.69 0.705203
Target:  5'- gCCCGGGguuggcucgguggcGCGGGCggagCGGGCGgAGCg- -3'
miRNA:   3'- -GGGCUCa-------------UGCUCGa---GCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 15942 0.69 0.701191
Target:  5'- gCCCGGGcAgGAGC-CGGGgGCGAgUGg -3'
miRNA:   3'- -GGGCUCaUgCUCGaGCCCgCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 127911 0.68 0.769543
Target:  5'- gCCUGGGcuUGGGCUCGGGCccgcucgauGCGGCg- -3'
miRNA:   3'- -GGGCUCauGCUCGAGCCCG---------CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 2453 0.68 0.760072
Target:  5'- cCUCGGGgucgaagGCGAGCgcCGGGCGCcagGGCUc -3'
miRNA:   3'- -GGGCUCa------UGCUCGa-GCCCGCG---UUGAu -5'
23763 5' -56.7 NC_005261.1 + 127652 0.68 0.760072
Target:  5'- gCCGGGgggcgcGCGGGUUCgGGGCGgGACg- -3'
miRNA:   3'- gGGCUCa-----UGCUCGAG-CCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 98365 0.68 0.760072
Target:  5'- -gUGGGcGCGGGCUcuggCGGGCGCAAUa- -3'
miRNA:   3'- ggGCUCaUGCUCGA----GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 23749 0.68 0.760072
Target:  5'- gUCCGGGagggGCGGGCUugcccCGGGCGggcCGGCUAg -3'
miRNA:   3'- -GGGCUCa---UGCUCGA-----GCCCGC---GUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 94783 0.68 0.750488
Target:  5'- gCCGc--GCGAGCUCGaGGUGCuGCUGc -3'
miRNA:   3'- gGGCucaUGCUCGAGC-CCGCGuUGAU- -5'
23763 5' -56.7 NC_005261.1 + 48899 0.68 0.750488
Target:  5'- gCCGcAGUuggccucuagcGCGAGCcCGGGCGcCAGCg- -3'
miRNA:   3'- gGGC-UCA-----------UGCUCGaGCCCGC-GUUGau -5'
23763 5' -56.7 NC_005261.1 + 59873 0.68 0.750488
Target:  5'- gCCucGUACGGGUgccggCGGGCaGCAGCUc -3'
miRNA:   3'- gGGcuCAUGCUCGa----GCCCG-CGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 59398 0.68 0.750488
Target:  5'- gCCGAGccCGGGCUCGccGGCGCcggcGCUGu -3'
miRNA:   3'- gGGCUCauGCUCGAGC--CCGCGu---UGAU- -5'
23763 5' -56.7 NC_005261.1 + 38806 0.68 0.769543
Target:  5'- cUCCaucgACGAGCUCGGGCGgcgcCAGCUc -3'
miRNA:   3'- -GGGcucaUGCUCGAGCCCGC----GUUGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.