Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23763 | 5' | -56.7 | NC_005261.1 | + | 97752 | 0.68 | 0.7408 |
Target: 5'- -gCGGG-GCGGGCUCGgcGGCGCGGCc- -3' miRNA: 3'- ggGCUCaUGCUCGAGC--CCGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 59398 | 0.68 | 0.750488 |
Target: 5'- gCCGAGccCGGGCUCGccGGCGCcggcGCUGu -3' miRNA: 3'- gGGCUCauGCUCGAGC--CCGCGu---UGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 59873 | 0.68 | 0.750488 |
Target: 5'- gCCucGUACGGGUgccggCGGGCaGCAGCUc -3' miRNA: 3'- gGGcuCAUGCUCGa----GCCCG-CGUUGAu -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 48899 | 0.68 | 0.750488 |
Target: 5'- gCCGcAGUuggccucuagcGCGAGCcCGGGCGcCAGCg- -3' miRNA: 3'- gGGC-UCA-----------UGCUCGaGCCCGC-GUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 94783 | 0.68 | 0.750488 |
Target: 5'- gCCGc--GCGAGCUCGaGGUGCuGCUGc -3' miRNA: 3'- gGGCucaUGCUCGAGC-CCGCGuUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 23749 | 0.68 | 0.760072 |
Target: 5'- gUCCGGGagggGCGGGCUugcccCGGGCGggcCGGCUAg -3' miRNA: 3'- -GGGCUCa---UGCUCGA-----GCCCGC---GUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 98365 | 0.68 | 0.760072 |
Target: 5'- -gUGGGcGCGGGCUcuggCGGGCGCAAUa- -3' miRNA: 3'- ggGCUCaUGCUCGA----GCCCGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 48321 | 0.67 | 0.840163 |
Target: 5'- gUCGGGccCGGGCUCGGGgGCGcgcGCg- -3' miRNA: 3'- gGGCUCauGCUCGAGCCCgCGU---UGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 443 | 0.67 | 0.840163 |
Target: 5'- aCCGGG-ACGGGgaCGGGggcCGCGACg- -3' miRNA: 3'- gGGCUCaUGCUCgaGCCC---GCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 96847 | 0.67 | 0.840163 |
Target: 5'- gCCGGGgucgACGgggGGCUCgggGGGCGCGGgUAg -3' miRNA: 3'- gGGCUCa---UGC---UCGAG---CCCGCGUUgAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 127751 | 0.67 | 0.831915 |
Target: 5'- -gCGGGaGCGGGCcgcggCGGGCGCGAa-- -3' miRNA: 3'- ggGCUCaUGCUCGa----GCCCGCGUUgau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 50991 | 0.67 | 0.831915 |
Target: 5'- gCCGAcgGCG-GCgcgUGGGCGCGGCg- -3' miRNA: 3'- gGGCUcaUGCuCGa--GCCCGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 124696 | 0.67 | 0.831915 |
Target: 5'- aCCUGAGgcUGGGCagGGGCGUAc--- -3' miRNA: 3'- -GGGCUCauGCUCGagCCCGCGUugau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 115477 | 0.67 | 0.831915 |
Target: 5'- gUCGGucGCGGGCUCGGcCGCGGCg- -3' miRNA: 3'- gGGCUcaUGCUCGAGCCcGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 108901 | 0.67 | 0.814882 |
Target: 5'- gCCCGccgGCGAGCg-GGGCGCGGg-- -3' miRNA: 3'- -GGGCucaUGCUCGagCCCGCGUUgau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 81271 | 0.67 | 0.814882 |
Target: 5'- cCCCGGccgccuGcGCGAGC-CGGaGCGCGGCg- -3' miRNA: 3'- -GGGCU------CaUGCUCGaGCC-CGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 131637 | 0.67 | 0.814882 |
Target: 5'- gCCgCGAGgaccgACGGGCccccCGGGCGCAccguCUGc -3' miRNA: 3'- -GG-GCUCa----UGCUCGa---GCCCGCGUu---GAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 135077 | 0.67 | 0.806112 |
Target: 5'- uUCCGGcgGCGGGCUCGcGGCccgGCGGCg- -3' miRNA: 3'- -GGGCUcaUGCUCGAGC-CCG---CGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 65840 | 0.67 | 0.806112 |
Target: 5'- gCCCGAGUgccGCGAGUagCGGucCGCGGCg- -3' miRNA: 3'- -GGGCUCA---UGCUCGa-GCCc-GCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 48767 | 0.67 | 0.840163 |
Target: 5'- cCCCGGGcggcccgACGAGCUCGGcgauCGcCGGCUc -3' miRNA: 3'- -GGGCUCa------UGCUCGAGCCc---GC-GUUGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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