miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 79420 0.82 0.150357
Target:  5'- gCCCGuGUcgGCGAGCUCGGcGCGCGugUAc -3'
miRNA:   3'- -GGGCuCA--UGCUCGAGCC-CGCGUugAU- -5'
23763 5' -56.7 NC_005261.1 + 112661 0.76 0.335099
Target:  5'- gCCGAGUACGAGCggcUGGaGCGCGagggGCUGg -3'
miRNA:   3'- gGGCUCAUGCUCGa--GCC-CGCGU----UGAU- -5'
23763 5' -56.7 NC_005261.1 + 111587 0.75 0.36629
Target:  5'- gCUCGAGgcCGAGCacgcggagUGGGCGCGGCUGg -3'
miRNA:   3'- -GGGCUCauGCUCGa-------GCCCGCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 96267 0.75 0.382618
Target:  5'- cCUCGAGUACGAGgaCGacgcuGGCGCGGCUu -3'
miRNA:   3'- -GGGCUCAUGCUCgaGC-----CCGCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 6182 0.74 0.425497
Target:  5'- gCCCGccuaGGUGCGAGggCGGGCcCAGCUGg -3'
miRNA:   3'- -GGGC----UCAUGCUCgaGCCCGcGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 12710 0.73 0.509321
Target:  5'- gCCCGA--GCG-GCUCGGGCGCGc--- -3'
miRNA:   3'- -GGGCUcaUGCuCGAGCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 1252 0.73 0.509321
Target:  5'- gCCCGAGUcCGuGCcCGGGgGUGACUGu -3'
miRNA:   3'- -GGGCUCAuGCuCGaGCCCgCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 121405 0.72 0.525954
Target:  5'- gCCCGAGUGCGAcggcugccgccgccGCUaCGGG-GCGGCg- -3'
miRNA:   3'- -GGGCUCAUGCU--------------CGA-GCCCgCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 80105 0.72 0.548771
Target:  5'- gCCGcGGUACcGGCUUGGGCGCcGCg- -3'
miRNA:   3'- gGGC-UCAUGcUCGAGCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 1188 0.72 0.548771
Target:  5'- gCCGGGgcCgGGGC-CGGGCGCGGCg- -3'
miRNA:   3'- gGGCUCauG-CUCGaGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 63945 0.72 0.55879
Target:  5'- gCCCGGGUGC-AGCccCGuGCGCAGCUGg -3'
miRNA:   3'- -GGGCUCAUGcUCGa-GCcCGCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 59235 0.71 0.599307
Target:  5'- gCCGGGccACGAGCgagagCGGGCGcCGGCg- -3'
miRNA:   3'- gGGCUCa-UGCUCGa----GCCCGC-GUUGau -5'
23763 5' -56.7 NC_005261.1 + 71619 0.71 0.599307
Target:  5'- gCCCGGGcGCGGGCcCGGGCGgCGGg-- -3'
miRNA:   3'- -GGGCUCaUGCUCGaGCCCGC-GUUgau -5'
23763 5' -56.7 NC_005261.1 + 96715 0.71 0.599307
Target:  5'- -gCGAGUugGCGGGCaccaccCGGGCGCGGCg- -3'
miRNA:   3'- ggGCUCA--UGCUCGa-----GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 125111 0.71 0.599307
Target:  5'- uUCCGGG-GCGcGCUCGGGUGguGCg- -3'
miRNA:   3'- -GGGCUCaUGCuCGAGCCCGCguUGau -5'
23763 5' -56.7 NC_005261.1 + 72131 0.71 0.609514
Target:  5'- cCCCGAa---GAGCccCGGGUGCGACUGc -3'
miRNA:   3'- -GGGCUcaugCUCGa-GCCCGCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 118388 0.7 0.629972
Target:  5'- gCCCGAGgcgcugGCG-GCcgCGGGCGCcGCa- -3'
miRNA:   3'- -GGGCUCa-----UGCuCGa-GCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 70569 0.7 0.640207
Target:  5'- gCCGcGaa-GAGCUCGGGCGCGAg-- -3'
miRNA:   3'- gGGCuCaugCUCGAGCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 22677 0.7 0.640207
Target:  5'- gCCCGAGUGCcgccgGGGgaCGGGCccgGCGACg- -3'
miRNA:   3'- -GGGCUCAUG-----CUCgaGCCCG---CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 98191 0.7 0.640207
Target:  5'- gCCGGGggcgcgGCGGGCagCGGGCGCcGCc- -3'
miRNA:   3'- gGGCUCa-----UGCUCGa-GCCCGCGuUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.