miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 103912 0.67 0.840163
Target:  5'- aCCCGcGccGCcAGgUCGGGCGCGGCg- -3'
miRNA:   3'- -GGGCuCa-UGcUCgAGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 48767 0.67 0.840163
Target:  5'- cCCCGGGcggcccgACGAGCUCGGcgauCGcCGGCUc -3'
miRNA:   3'- -GGGCUCa------UGCUCGAGCCc---GC-GUUGAu -5'
23763 5' -56.7 NC_005261.1 + 48321 0.67 0.840163
Target:  5'- gUCGGGccCGGGCUCGGGgGCGcgcGCg- -3'
miRNA:   3'- gGGCUCauGCUCGAGCCCgCGU---UGau -5'
23763 5' -56.7 NC_005261.1 + 443 0.67 0.840163
Target:  5'- aCCGGG-ACGGGgaCGGGggcCGCGACg- -3'
miRNA:   3'- gGGCUCaUGCUCgaGCCC---GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 96847 0.67 0.840163
Target:  5'- gCCGGGgucgACGgggGGCUCgggGGGCGCGGgUAg -3'
miRNA:   3'- gGGCUCa---UGC---UCGAG---CCCGCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 115477 0.67 0.831915
Target:  5'- gUCGGucGCGGGCUCGGcCGCGGCg- -3'
miRNA:   3'- gGGCUcaUGCUCGAGCCcGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 124696 0.67 0.831915
Target:  5'- aCCUGAGgcUGGGCagGGGCGUAc--- -3'
miRNA:   3'- -GGGCUCauGCUCGagCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 50991 0.67 0.831915
Target:  5'- gCCGAcgGCG-GCgcgUGGGCGCGGCg- -3'
miRNA:   3'- gGGCUcaUGCuCGa--GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 127751 0.67 0.831915
Target:  5'- -gCGGGaGCGGGCcgcggCGGGCGCGAa-- -3'
miRNA:   3'- ggGCUCaUGCUCGa----GCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 81271 0.67 0.814882
Target:  5'- cCCCGGccgccuGcGCGAGC-CGGaGCGCGGCg- -3'
miRNA:   3'- -GGGCU------CaUGCUCGaGCC-CGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 131637 0.67 0.814882
Target:  5'- gCCgCGAGgaccgACGGGCccccCGGGCGCAccguCUGc -3'
miRNA:   3'- -GG-GCUCa----UGCUCGa---GCCCGCGUu---GAU- -5'
23763 5' -56.7 NC_005261.1 + 108901 0.67 0.814882
Target:  5'- gCCCGccgGCGAGCg-GGGCGCGGg-- -3'
miRNA:   3'- -GGGCucaUGCUCGagCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 135077 0.67 0.806112
Target:  5'- uUCCGGcgGCGGGCUCGcGGCccgGCGGCg- -3'
miRNA:   3'- -GGGCUcaUGCUCGAGC-CCG---CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 65840 0.67 0.806112
Target:  5'- gCCCGAGUgccGCGAGUagCGGucCGCGGCg- -3'
miRNA:   3'- -GGGCUCA---UGCUCGa-GCCc-GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 128061 0.67 0.797185
Target:  5'- aCCGGGccaugGCGGGCgggCGGGCG-AGCg- -3'
miRNA:   3'- gGGCUCa----UGCUCGa--GCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 13086 0.68 0.788108
Target:  5'- gCCCGucgGCGGGCggCGGGCuCGGCUc -3'
miRNA:   3'- -GGGCucaUGCUCGa-GCCCGcGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 71182 0.68 0.778891
Target:  5'- gUCCGGGcGC-AGCUCgcgGGGCGCGGCc- -3'
miRNA:   3'- -GGGCUCaUGcUCGAG---CCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 3624 0.68 0.778891
Target:  5'- gCCCgGAGcACGcGCUcCGGGUGCGccGCUAg -3'
miRNA:   3'- -GGG-CUCaUGCuCGA-GCCCGCGU--UGAU- -5'
23763 5' -56.7 NC_005261.1 + 90675 0.68 0.769543
Target:  5'- aCCGuG-ACGAccaUCGGGCGCGACa- -3'
miRNA:   3'- gGGCuCaUGCUcg-AGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 32465 0.68 0.769543
Target:  5'- cCCCGGGcACGGaCUCGGGCuucccggggccgGCGACg- -3'
miRNA:   3'- -GGGCUCaUGCUcGAGCCCG------------CGUUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.