miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 443 0.67 0.840163
Target:  5'- aCCGGG-ACGGGgaCGGGggcCGCGACg- -3'
miRNA:   3'- gGGCUCaUGCUCgaGCCC---GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 1188 0.72 0.548771
Target:  5'- gCCGGGgcCgGGGC-CGGGCGCGGCg- -3'
miRNA:   3'- gGGCUCauG-CUCGaGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 1252 0.73 0.509321
Target:  5'- gCCCGAGUcCGuGCcCGGGgGUGACUGu -3'
miRNA:   3'- -GGGCUCAuGCuCGaGCCCgCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 2453 0.68 0.760072
Target:  5'- cCUCGGGgucgaagGCGAGCgcCGGGCGCcagGGCUc -3'
miRNA:   3'- -GGGCUCa------UGCUCGa-GCCCGCG---UUGAu -5'
23763 5' -56.7 NC_005261.1 + 2824 0.69 0.731017
Target:  5'- gCCCcAGccCGAGCUCGGGCgGCAGg-- -3'
miRNA:   3'- -GGGcUCauGCUCGAGCCCG-CGUUgau -5'
23763 5' -56.7 NC_005261.1 + 3540 0.66 0.848221
Target:  5'- gCCUcGGcGCGcAGCgcggCGGGCGCGGCg- -3'
miRNA:   3'- -GGGcUCaUGC-UCGa---GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 3624 0.68 0.778891
Target:  5'- gCCCgGAGcACGcGCUcCGGGUGCGccGCUAg -3'
miRNA:   3'- -GGG-CUCaUGCuCGA-GCCCGCGU--UGAU- -5'
23763 5' -56.7 NC_005261.1 + 3864 0.66 0.848221
Target:  5'- gCCGcgcGGccgGCGAGCaCGGcGCGCAGCUc -3'
miRNA:   3'- gGGC---UCa--UGCUCGaGCC-CGCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 6182 0.74 0.425497
Target:  5'- gCCCGccuaGGUGCGAGggCGGGCcCAGCUGg -3'
miRNA:   3'- -GGGC----UCAUGCUCgaGCCCGcGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 12302 0.66 0.871195
Target:  5'- gCCgCGGGcACGGGCgcguagccggCGGGCGCGcGCUu -3'
miRNA:   3'- -GG-GCUCaUGCUCGa---------GCCCGCGU-UGAu -5'
23763 5' -56.7 NC_005261.1 + 12710 0.73 0.509321
Target:  5'- gCCCGA--GCG-GCUCGGGCGCGc--- -3'
miRNA:   3'- -GGGCUcaUGCuCGAGCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 13086 0.68 0.788108
Target:  5'- gCCCGucgGCGGGCggCGGGCuCGGCUc -3'
miRNA:   3'- -GGGCucaUGCUCGa-GCCCGcGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 13240 0.66 0.847424
Target:  5'- cCCCGAGgcCGAgGC-CGGcGCGCcgucaaaGACUAg -3'
miRNA:   3'- -GGGCUCauGCU-CGaGCC-CGCG-------UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 15942 0.69 0.701191
Target:  5'- gCCCGGGcAgGAGC-CGGGgGCGAgUGg -3'
miRNA:   3'- -GGGCUCaUgCUCGaGCCCgCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 22677 0.7 0.640207
Target:  5'- gCCCGAGUGCcgccgGGGgaCGGGCccgGCGACg- -3'
miRNA:   3'- -GGGCUCAUG-----CUCgaGCCCG---CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 23317 0.7 0.666768
Target:  5'- gCCGAGcagaaagaagccgACGAGCgCGcGGCGCAGCg- -3'
miRNA:   3'- gGGCUCa------------UGCUCGaGC-CCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 23749 0.68 0.760072
Target:  5'- gUCCGGGagggGCGGGCUugcccCGGGCGggcCGGCUAg -3'
miRNA:   3'- -GGGCUCa---UGCUCGA-----GCCCGC---GUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 27466 0.66 0.863744
Target:  5'- cCCCGcGGgGCGGGCaggcccucccCGGGCGCAcCUGg -3'
miRNA:   3'- -GGGC-UCaUGCUCGa---------GCCCGCGUuGAU- -5'
23763 5' -56.7 NC_005261.1 + 28577 0.66 0.848221
Target:  5'- gCCGAGgcgcGCGAGCgccggCGGGcCGCccgcgccgAGCUGg -3'
miRNA:   3'- gGGCUCa---UGCUCGa----GCCC-GCG--------UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 32141 0.66 0.863744
Target:  5'- aCCGc-UGgGGGCUCGGcGCGCcGCUGc -3'
miRNA:   3'- gGGCucAUgCUCGAGCC-CGCGuUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.