miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 32465 0.68 0.769543
Target:  5'- cCCCGGGcACGGaCUCGGGCuucccggggccgGCGACg- -3'
miRNA:   3'- -GGGCUCaUGCUcGAGCCCG------------CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 38806 0.68 0.769543
Target:  5'- cUCCaucgACGAGCUCGGGCGgcgcCAGCUc -3'
miRNA:   3'- -GGGcucaUGCUCGAGCCCGC----GUUGAu -5'
23763 5' -56.7 NC_005261.1 + 48321 0.67 0.840163
Target:  5'- gUCGGGccCGGGCUCGGGgGCGcgcGCg- -3'
miRNA:   3'- gGGCUCauGCUCGAGCCCgCGU---UGau -5'
23763 5' -56.7 NC_005261.1 + 48767 0.67 0.840163
Target:  5'- cCCCGGGcggcccgACGAGCUCGGcgauCGcCGGCUc -3'
miRNA:   3'- -GGGCUCa------UGCUCGAGCCc---GC-GUUGAu -5'
23763 5' -56.7 NC_005261.1 + 48899 0.68 0.750488
Target:  5'- gCCGcAGUuggccucuagcGCGAGCcCGGGCGcCAGCg- -3'
miRNA:   3'- gGGC-UCA-----------UGCUCGaGCCCGC-GUUGau -5'
23763 5' -56.7 NC_005261.1 + 50991 0.67 0.831915
Target:  5'- gCCGAcgGCG-GCgcgUGGGCGCGGCg- -3'
miRNA:   3'- gGGCUcaUGCuCGa--GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 51208 0.69 0.731017
Target:  5'- cCCCGGGcGCGcuGCUgcUGGGCGCG-CUAg -3'
miRNA:   3'- -GGGCUCaUGCu-CGA--GCCCGCGUuGAU- -5'
23763 5' -56.7 NC_005261.1 + 59235 0.71 0.599307
Target:  5'- gCCGGGccACGAGCgagagCGGGCGcCGGCg- -3'
miRNA:   3'- gGGCUCa-UGCUCGa----GCCCGC-GUUGau -5'
23763 5' -56.7 NC_005261.1 + 59398 0.68 0.750488
Target:  5'- gCCGAGccCGGGCUCGccGGCGCcggcGCUGu -3'
miRNA:   3'- gGGCUCauGCUCGAGC--CCGCGu---UGAU- -5'
23763 5' -56.7 NC_005261.1 + 59873 0.68 0.750488
Target:  5'- gCCucGUACGGGUgccggCGGGCaGCAGCUc -3'
miRNA:   3'- gGGcuCAUGCUCGa----GCCCG-CGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 63945 0.72 0.55879
Target:  5'- gCCCGGGUGC-AGCccCGuGCGCAGCUGg -3'
miRNA:   3'- -GGGCUCAUGcUCGa-GCcCGCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 65840 0.67 0.806112
Target:  5'- gCCCGAGUgccGCGAGUagCGGucCGCGGCg- -3'
miRNA:   3'- -GGGCUCA---UGCUCGa-GCCc-GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 67053 0.66 0.878432
Target:  5'- gCCCGuGUagGCGGGCgcgcgCGGGgGCucGCUc -3'
miRNA:   3'- -GGGCuCA--UGCUCGa----GCCCgCGu-UGAu -5'
23763 5' -56.7 NC_005261.1 + 70569 0.7 0.640207
Target:  5'- gCCGcGaa-GAGCUCGGGCGCGAg-- -3'
miRNA:   3'- gGGCuCaugCUCGAGCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 71182 0.68 0.778891
Target:  5'- gUCCGGGcGC-AGCUCgcgGGGCGCGGCc- -3'
miRNA:   3'- -GGGCUCaUGcUCGAG---CCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 71619 0.71 0.599307
Target:  5'- gCCCGGGcGCGGGCcCGGGCGgCGGg-- -3'
miRNA:   3'- -GGGCUCaUGCUCGaGCCCGC-GUUgau -5'
23763 5' -56.7 NC_005261.1 + 72131 0.71 0.609514
Target:  5'- cCCCGAa---GAGCccCGGGUGCGACUGc -3'
miRNA:   3'- -GGGCUcaugCUCGa-GCCCGCGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 72614 0.66 0.878432
Target:  5'- aCCGGGcggGCGGGCgcaGGG-GCGGCUu -3'
miRNA:   3'- gGGCUCa--UGCUCGag-CCCgCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 75957 0.7 0.681001
Target:  5'- cCCCGAGguggaggucACGcAGCUcuuccCGGGCGCGGCc- -3'
miRNA:   3'- -GGGCUCa--------UGC-UCGA-----GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 79420 0.82 0.150357
Target:  5'- gCCCGuGUcgGCGAGCUCGGcGCGCGugUAc -3'
miRNA:   3'- -GGGCuCA--UGCUCGAGCC-CGCGUugAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.