miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 80105 0.72 0.548771
Target:  5'- gCCGcGGUACcGGCUUGGGCGCcGCg- -3'
miRNA:   3'- gGGC-UCAUGcUCGAGCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 81271 0.67 0.814882
Target:  5'- cCCCGGccgccuGcGCGAGC-CGGaGCGCGGCg- -3'
miRNA:   3'- -GGGCU------CaUGCUCGaGCC-CGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 89087 0.66 0.848221
Target:  5'- aCCGGcUGCG-GCcCGGGCGC-GCUGg -3'
miRNA:   3'- gGGCUcAUGCuCGaGCCCGCGuUGAU- -5'
23763 5' -56.7 NC_005261.1 + 90675 0.68 0.769543
Target:  5'- aCCGuG-ACGAccaUCGGGCGCGACa- -3'
miRNA:   3'- gGGCuCaUGCUcg-AGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 91156 0.66 0.871195
Target:  5'- gCCCG---GCGAGUggccCGGGCgGCAGCUc -3'
miRNA:   3'- -GGGCucaUGCUCGa---GCCCG-CGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 94783 0.68 0.750488
Target:  5'- gCCGc--GCGAGCUCGaGGUGCuGCUGc -3'
miRNA:   3'- gGGCucaUGCUCGAGC-CCGCGuUGAU- -5'
23763 5' -56.7 NC_005261.1 + 96267 0.75 0.382618
Target:  5'- cCUCGAGUACGAGgaCGacgcuGGCGCGGCUu -3'
miRNA:   3'- -GGGCUCAUGCUCgaGC-----CCGCGUUGAu -5'
23763 5' -56.7 NC_005261.1 + 96715 0.71 0.599307
Target:  5'- -gCGAGUugGCGGGCaccaccCGGGCGCGGCg- -3'
miRNA:   3'- ggGCUCA--UGCUCGa-----GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 96847 0.67 0.840163
Target:  5'- gCCGGGgucgACGgggGGCUCgggGGGCGCGGgUAg -3'
miRNA:   3'- gGGCUCa---UGC---UCGAG---CCCGCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 97568 0.69 0.705203
Target:  5'- gCCCGGGguuggcucgguggcGCGGGCggagCGGGCGgAGCg- -3'
miRNA:   3'- -GGGCUCa-------------UGCUCGa---GCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 97625 0.66 0.878432
Target:  5'- -gCGGGcggaGCGGGCggagCGGGCGCGGgUGc -3'
miRNA:   3'- ggGCUCa---UGCUCGa---GCCCGCGUUgAU- -5'
23763 5' -56.7 NC_005261.1 + 97660 0.69 0.720157
Target:  5'- aCCUGGGgggccgGCGuccgcggGGCUUGGGCGgGGCUGc -3'
miRNA:   3'- -GGGCUCa-----UGC-------UCGAGCCCGCgUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 97752 0.68 0.7408
Target:  5'- -gCGGG-GCGGGCUCGgcGGCGCGGCc- -3'
miRNA:   3'- ggGCUCaUGCUCGAGC--CCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 98191 0.7 0.640207
Target:  5'- gCCGGGggcgcgGCGGGCagCGGGCGCcGCc- -3'
miRNA:   3'- gGGCUCa-----UGCUCGa-GCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 98365 0.68 0.760072
Target:  5'- -gUGGGcGCGGGCUcuggCGGGCGCAAUa- -3'
miRNA:   3'- ggGCUCaUGCUCGA----GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 98574 0.68 0.769543
Target:  5'- gCCGuccuccGCGGGCUCGGGCGaguaGGCg- -3'
miRNA:   3'- gGGCuca---UGCUCGAGCCCGCg---UUGau -5'
23763 5' -56.7 NC_005261.1 + 101565 0.66 0.878432
Target:  5'- gCCGAGgAUGcGCUCGGcGCGCGcCg- -3'
miRNA:   3'- gGGCUCaUGCuCGAGCC-CGCGUuGau -5'
23763 5' -56.7 NC_005261.1 + 103912 0.67 0.840163
Target:  5'- aCCCGcGccGCcAGgUCGGGCGCGGCg- -3'
miRNA:   3'- -GGGCuCa-UGcUCgAGCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 104179 0.66 0.878432
Target:  5'- gCCGcGcGCGGGUcgUCGGGCGgGACg- -3'
miRNA:   3'- gGGCuCaUGCUCG--AGCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 108901 0.67 0.814882
Target:  5'- gCCCGccgGCGAGCg-GGGCGCGGg-- -3'
miRNA:   3'- -GGGCucaUGCUCGagCCCGCGUUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.