miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 5' -56.7 NC_005261.1 + 138114 0.67 0.840163
Target:  5'- aCCGGG-ACGGGgaCGGGggcCGCGACg- -3'
miRNA:   3'- gGGCUCaUGCUCgaGCCC---GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 135077 0.67 0.806112
Target:  5'- uUCCGGcgGCGGGCUCGcGGCccgGCGGCg- -3'
miRNA:   3'- -GGGCUcaUGCUCGAGC-CCG---CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 132528 0.66 0.871195
Target:  5'- -aCGAGUACGAGCgcgcccUCGcGCGCGAg-- -3'
miRNA:   3'- ggGCUCAUGCUCG------AGCcCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 131637 0.67 0.814882
Target:  5'- gCCgCGAGgaccgACGGGCccccCGGGCGCAccguCUGc -3'
miRNA:   3'- -GG-GCUCa----UGCUCGa---GCCCGCGUu---GAU- -5'
23763 5' -56.7 NC_005261.1 + 128800 0.66 0.856084
Target:  5'- gCCCGGGcccgcgGCgGGGCUCGcGCuGCGGCUGa -3'
miRNA:   3'- -GGGCUCa-----UG-CUCGAGCcCG-CGUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 128061 0.67 0.797185
Target:  5'- aCCGGGccaugGCGGGCgggCGGGCG-AGCg- -3'
miRNA:   3'- gGGCUCa----UGCUCGa--GCCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 127911 0.68 0.769543
Target:  5'- gCCUGGGcuUGGGCUCGGGCccgcucgauGCGGCg- -3'
miRNA:   3'- -GGGCUCauGCUCGAGCCCG---------CGUUGau -5'
23763 5' -56.7 NC_005261.1 + 127789 0.66 0.871195
Target:  5'- gCUCGAGcgGCGGGC-CGGcGcCGCGGCg- -3'
miRNA:   3'- -GGGCUCa-UGCUCGaGCC-C-GCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 127751 0.67 0.831915
Target:  5'- -gCGGGaGCGGGCcgcggCGGGCGCGAa-- -3'
miRNA:   3'- ggGCUCaUGCUCGa----GCCCGCGUUgau -5'
23763 5' -56.7 NC_005261.1 + 127652 0.68 0.760072
Target:  5'- gCCGGGgggcgcGCGGGUUCgGGGCGgGACg- -3'
miRNA:   3'- gGGCUCa-----UGCUCGAG-CCCGCgUUGau -5'
23763 5' -56.7 NC_005261.1 + 125111 0.71 0.599307
Target:  5'- uUCCGGG-GCGcGCUCGGGUGguGCg- -3'
miRNA:   3'- -GGGCUCaUGCuCGAGCCCGCguUGau -5'
23763 5' -56.7 NC_005261.1 + 124696 0.67 0.831915
Target:  5'- aCCUGAGgcUGGGCagGGGCGUAc--- -3'
miRNA:   3'- -GGGCUCauGCUCGagCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 123159 0.69 0.721148
Target:  5'- -aCGAGggcgggGCGGGCgcgCGGGCGUgguGGCUGg -3'
miRNA:   3'- ggGCUCa-----UGCUCGa--GCCCGCG---UUGAU- -5'
23763 5' -56.7 NC_005261.1 + 121405 0.72 0.525954
Target:  5'- gCCCGAGUGCGAcggcugccgccgccGCUaCGGG-GCGGCg- -3'
miRNA:   3'- -GGGCUCAUGCU--------------CGA-GCCCgCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 119794 0.66 0.871195
Target:  5'- aCCGcAGcGCgGAGCU-GGGCGgCAACUAc -3'
miRNA:   3'- gGGC-UCaUG-CUCGAgCCCGC-GUUGAU- -5'
23763 5' -56.7 NC_005261.1 + 118913 0.69 0.711203
Target:  5'- gUCUGGGUcCGGcGCcgCGGGCGCGGCg- -3'
miRNA:   3'- -GGGCUCAuGCU-CGa-GCCCGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 118388 0.7 0.629972
Target:  5'- gCCCGAGgcgcugGCG-GCcgCGGGCGCcGCa- -3'
miRNA:   3'- -GGGCUCa-----UGCuCGa-GCCCGCGuUGau -5'
23763 5' -56.7 NC_005261.1 + 115825 0.66 0.871195
Target:  5'- -aCGcGGUGCGccAGCUUGGGCGCGu--- -3'
miRNA:   3'- ggGC-UCAUGC--UCGAGCCCGCGUugau -5'
23763 5' -56.7 NC_005261.1 + 115477 0.67 0.831915
Target:  5'- gUCGGucGCGGGCUCGGcCGCGGCg- -3'
miRNA:   3'- gGGCUcaUGCUCGAGCCcGCGUUGau -5'
23763 5' -56.7 NC_005261.1 + 113876 0.7 0.669823
Target:  5'- cUCCGGGUgccaccuguagcgGCGAcGCggCGGGCGCGAUg- -3'
miRNA:   3'- -GGGCUCA-------------UGCU-CGa-GCCCGCGUUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.