Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23763 | 5' | -56.7 | NC_005261.1 | + | 104179 | 0.66 | 0.878432 |
Target: 5'- gCCGcGcGCGGGUcgUCGGGCGgGACg- -3' miRNA: 3'- gGGCuCaUGCUCG--AGCCCGCgUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 71619 | 0.71 | 0.599307 |
Target: 5'- gCCCGGGcGCGGGCcCGGGCGgCGGg-- -3' miRNA: 3'- -GGGCUCaUGCUCGaGCCCGC-GUUgau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 96715 | 0.71 | 0.599307 |
Target: 5'- -gCGAGUugGCGGGCaccaccCGGGCGCGGCg- -3' miRNA: 3'- ggGCUCA--UGCUCGa-----GCCCGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 125111 | 0.71 | 0.599307 |
Target: 5'- uUCCGGG-GCGcGCUCGGGUGguGCg- -3' miRNA: 3'- -GGGCUCaUGCuCGAGCCCGCguUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 72131 | 0.71 | 0.609514 |
Target: 5'- cCCCGAa---GAGCccCGGGUGCGACUGc -3' miRNA: 3'- -GGGCUcaugCUCGa-GCCCGCGUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 118388 | 0.7 | 0.629972 |
Target: 5'- gCCCGAGgcgcugGCG-GCcgCGGGCGCcGCa- -3' miRNA: 3'- -GGGCUCa-----UGCuCGa-GCCCGCGuUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 70569 | 0.7 | 0.640207 |
Target: 5'- gCCGcGaa-GAGCUCGGGCGCGAg-- -3' miRNA: 3'- gGGCuCaugCUCGAGCCCGCGUUgau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 22677 | 0.7 | 0.640207 |
Target: 5'- gCCCGAGUGCcgccgGGGgaCGGGCccgGCGACg- -3' miRNA: 3'- -GGGCUCAUG-----CUCgaGCCCG---CGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 98191 | 0.7 | 0.640207 |
Target: 5'- gCCGGGggcgcgGCGGGCagCGGGCGCcGCc- -3' miRNA: 3'- gGGCUCa-----UGCUCGa-GCCCGCGuUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 59235 | 0.71 | 0.599307 |
Target: 5'- gCCGGGccACGAGCgagagCGGGCGcCGGCg- -3' miRNA: 3'- gGGCUCa-UGCUCGa----GCCCGC-GUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 63945 | 0.72 | 0.55879 |
Target: 5'- gCCCGGGUGC-AGCccCGuGCGCAGCUGg -3' miRNA: 3'- -GGGCUCAUGcUCGa-GCcCGCGUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 1188 | 0.72 | 0.548771 |
Target: 5'- gCCGGGgcCgGGGC-CGGGCGCGGCg- -3' miRNA: 3'- gGGCUCauG-CUCGaGCCCGCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 112661 | 0.76 | 0.335099 |
Target: 5'- gCCGAGUACGAGCggcUGGaGCGCGagggGCUGg -3' miRNA: 3'- gGGCUCAUGCUCGa--GCC-CGCGU----UGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 111587 | 0.75 | 0.36629 |
Target: 5'- gCUCGAGgcCGAGCacgcggagUGGGCGCGGCUGg -3' miRNA: 3'- -GGGCUCauGCUCGa-------GCCCGCGUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 96267 | 0.75 | 0.382618 |
Target: 5'- cCUCGAGUACGAGgaCGacgcuGGCGCGGCUu -3' miRNA: 3'- -GGGCUCAUGCUCgaGC-----CCGCGUUGAu -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 6182 | 0.74 | 0.425497 |
Target: 5'- gCCCGccuaGGUGCGAGggCGGGCcCAGCUGg -3' miRNA: 3'- -GGGC----UCAUGCUCgaGCCCGcGUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 1252 | 0.73 | 0.509321 |
Target: 5'- gCCCGAGUcCGuGCcCGGGgGUGACUGu -3' miRNA: 3'- -GGGCUCAuGCuCGaGCCCgCGUUGAU- -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 12710 | 0.73 | 0.509321 |
Target: 5'- gCCCGA--GCG-GCUCGGGCGCGc--- -3' miRNA: 3'- -GGGCUcaUGCuCGAGCCCGCGUugau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 121405 | 0.72 | 0.525954 |
Target: 5'- gCCCGAGUGCGAcggcugccgccgccGCUaCGGG-GCGGCg- -3' miRNA: 3'- -GGGCUCAUGCU--------------CGA-GCCCgCGUUGau -5' |
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23763 | 5' | -56.7 | NC_005261.1 | + | 80105 | 0.72 | 0.548771 |
Target: 5'- gCCGcGGUACcGGCUUGGGCGCcGCg- -3' miRNA: 3'- gGGC-UCAUGcUCGAGCCCGCGuUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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