miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 131596 0.66 0.703013
Target:  5'- aGGCCUacGCGcGcGCGcGCACGUACGCGc -3'
miRNA:   3'- -CUGGAccCGC-C-CGU-CGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 98931 0.66 0.703013
Target:  5'- --gCUGcGGgGGGCAGCGCGUccuCGUa- -3'
miRNA:   3'- cugGAC-CCgCCCGUCGUGCAu--GCGcc -5'
23764 3' -61 NC_005261.1 + 102167 0.66 0.703013
Target:  5'- cGCCaGcGGC-GGCGGCACGUcgauccGCGCGu -3'
miRNA:   3'- cUGGaC-CCGcCCGUCGUGCA------UGCGCc -5'
23764 3' -61 NC_005261.1 + 16049 0.66 0.703013
Target:  5'- -uCUUGGGCagcGGGCccgcgccgagccGGCGCGUguagacgaaguACGCGGc -3'
miRNA:   3'- cuGGACCCG---CCCG------------UCGUGCA-----------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 32918 0.66 0.703013
Target:  5'- cGCgUGGG-GGGCGGCggGCGggggggGgGCGGg -3'
miRNA:   3'- cUGgACCCgCCCGUCG--UGCa-----UgCGCC- -5'
23764 3' -61 NC_005261.1 + 53721 0.66 0.703013
Target:  5'- cGGCCagcUGcGGCgcgcccgcacGGGCgAGCACGUGC-CGGa -3'
miRNA:   3'- -CUGG---AC-CCG----------CCCG-UCGUGCAUGcGCC- -5'
23764 3' -61 NC_005261.1 + 68101 0.66 0.703013
Target:  5'- aGGCCgugaaguucGGGCuGGaGCuGCGCGggccgcgGCGCGGc -3'
miRNA:   3'- -CUGGa--------CCCG-CC-CGuCGUGCa------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 64482 0.66 0.697169
Target:  5'- cGCCgGGugcaGCGGGUGGCGCGggugcucggggccCGCGGg -3'
miRNA:   3'- cUGGaCC----CGCCCGUCGUGCau-----------GCGCC- -5'
23764 3' -61 NC_005261.1 + 68996 0.66 0.693262
Target:  5'- gGGCCgcgcGGGCGccGCGGCuuCGUugGCGa -3'
miRNA:   3'- -CUGGa---CCCGCc-CGUCGu-GCAugCGCc -5'
23764 3' -61 NC_005261.1 + 148 0.66 0.693262
Target:  5'- gGGCUggcaGGGCuGGCGGa--GUugGCGGg -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCgugCAugCGCC- -5'
23764 3' -61 NC_005261.1 + 58085 0.66 0.693262
Target:  5'- cGCCaGGGCccgcguccucGGGCGGCACcagccGCGCGa -3'
miRNA:   3'- cUGGaCCCG----------CCCGUCGUGca---UGCGCc -5'
23764 3' -61 NC_005261.1 + 34480 0.66 0.693262
Target:  5'- uACCUGcGGCGGGU-GCugGa--GUGGg -3'
miRNA:   3'- cUGGAC-CCGCCCGuCGugCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 137831 0.66 0.693262
Target:  5'- gGGCUggcaGGGCuGGCGGa--GUugGCGGg -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCgugCAugCGCC- -5'
23764 3' -61 NC_005261.1 + 34927 0.66 0.693262
Target:  5'- cGGCCacgcgggGGGCGGcCGGCGCG-ACcCGGg -3'
miRNA:   3'- -CUGGa------CCCGCCcGUCGUGCaUGcGCC- -5'
23764 3' -61 NC_005261.1 + 109865 0.66 0.683464
Target:  5'- -uCCUGG--GGGCAGCGgGgccCGCGGg -3'
miRNA:   3'- cuGGACCcgCCCGUCGUgCau-GCGCC- -5'
23764 3' -61 NC_005261.1 + 90394 0.66 0.683464
Target:  5'- cGCCggcgGGGCuGGCgcccGGCGCGgacUACGCGa -3'
miRNA:   3'- cUGGa---CCCGcCCG----UCGUGC---AUGCGCc -5'
23764 3' -61 NC_005261.1 + 117314 0.66 0.683464
Target:  5'- aGCCccGGcGCGGGCAGCAa--GCGCa- -3'
miRNA:   3'- cUGGa-CC-CGCCCGUCGUgcaUGCGcc -5'
23764 3' -61 NC_005261.1 + 23862 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 98823 0.66 0.683464
Target:  5'- uGCCggaagacGGG-GGGguGgGCGUACaGCGGg -3'
miRNA:   3'- cUGGa------CCCgCCCguCgUGCAUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 71069 0.66 0.683464
Target:  5'- cGCCgcgcGGCGGGCGGgGCGU-C-CGGg -3'
miRNA:   3'- cUGGac--CCGCCCGUCgUGCAuGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.