miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 1929 0.66 0.653862
Target:  5'- cGCaCUGcgccGCGGGCAGCACcgcgGCGCGc -3'
miRNA:   3'- cUG-GACc---CGCCCGUCGUGca--UGCGCc -5'
23764 3' -61 NC_005261.1 + 22091 0.66 0.653862
Target:  5'- cGCCgcguggGGGCGGGagGGCG-GUGUGCGGa -3'
miRNA:   3'- cUGGa-----CCCGCCCg-UCGUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 126695 0.66 0.653862
Target:  5'- aGGCCggcGGuGCGGGaAGCggcugguucGCGUGCGCGu -3'
miRNA:   3'- -CUGGa--CC-CGCCCgUCG---------UGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 113886 0.66 0.653862
Target:  5'- cACCUGuagcggcgacgcGGCGGGCgcgauggccgaGGCAgCGgGCGCGGc -3'
miRNA:   3'- cUGGAC------------CCGCCCG-----------UCGU-GCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 43110 0.66 0.669681
Target:  5'- gGACgUGGcGCGGGauuGGCGCGccuacacacgcgcGCGCGGc -3'
miRNA:   3'- -CUGgACC-CGCCCg--UCGUGCa------------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 123414 0.66 0.653862
Target:  5'- cGGCCagGGGCGGGCucGCcACGggcCGCa- -3'
miRNA:   3'- -CUGGa-CCCGCCCGu-CG-UGCau-GCGcc -5'
23764 3' -61 NC_005261.1 + 112059 0.66 0.663755
Target:  5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3'
miRNA:   3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 99401 0.66 0.663755
Target:  5'- --gCUGGGCGGcuGCcGCACGaGCGUGa -3'
miRNA:   3'- cugGACCCGCC--CGuCGUGCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 13084 0.66 0.657821
Target:  5'- cGGCCcgucGGCGGGCGGCgggcucggcucggggGCGUcggcggcCGCGGg -3'
miRNA:   3'- -CUGGac--CCGCCCGUCG---------------UGCAu------GCGCC- -5'
23764 3' -61 NC_005261.1 + 103605 0.66 0.663755
Target:  5'- uGGCC-GcGGC-GGCAGCGCGggagGCgGCGGc -3'
miRNA:   3'- -CUGGaC-CCGcCCGUCGUGCa---UG-CGCC- -5'
23764 3' -61 NC_005261.1 + 29175 0.66 0.673625
Target:  5'- aGGCCaGGGCccGGcgcccucgccGCGGCGCccGCGCGGg -3'
miRNA:   3'- -CUGGaCCCG--CC----------CGUCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 68101 0.66 0.703013
Target:  5'- aGGCCgugaaguucGGGCuGGaGCuGCGCGggccgcgGCGCGGc -3'
miRNA:   3'- -CUGGa--------CCCG-CC-CGuCGUGCa------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 31670 0.66 0.653862
Target:  5'- uGCCUGcGGCuGGccGCGGCGCGgcgGCGGc -3'
miRNA:   3'- cUGGAC-CCG-CC--CGUCGUGCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 132896 0.66 0.663755
Target:  5'- aGCCgGGcgccGCGGGCGGCGcCGaGCgGCGGc -3'
miRNA:   3'- cUGGaCC----CGCCCGUCGU-GCaUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 108004 0.66 0.653862
Target:  5'- cGCCgucGGGCagccccagcaGcGGCAGCACGUcCGCGu -3'
miRNA:   3'- cUGGa--CCCG----------C-CCGUCGUGCAuGCGCc -5'
23764 3' -61 NC_005261.1 + 98563 0.66 0.663755
Target:  5'- -uCC--GGCGGGCGGC-CGUccucCGCGGg -3'
miRNA:   3'- cuGGacCCGCCCGUCGuGCAu---GCGCC- -5'
23764 3' -61 NC_005261.1 + 48028 0.66 0.653862
Target:  5'- aGAgCaGGGCGaGG-AGCACGcgcGCGCGGu -3'
miRNA:   3'- -CUgGaCCCGC-CCgUCGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 43354 0.66 0.673625
Target:  5'- uGCCUGGGgcuggugccgcUGcGGCGGCAuCGgccuCGCGGu -3'
miRNA:   3'- cUGGACCC-----------GC-CCGUCGU-GCau--GCGCC- -5'
23764 3' -61 NC_005261.1 + 23938 0.66 0.673625
Target:  5'- cACCUcGcGGCGGGUucgGGguCGUcggcACGCGGu -3'
miRNA:   3'- cUGGA-C-CCGCCCG---UCguGCA----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 34198 0.66 0.663755
Target:  5'- gGGCCgGaGGCaGaCGGCGCGUcggACGCGGa -3'
miRNA:   3'- -CUGGaC-CCGcCcGUCGUGCA---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.