miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 34480 0.66 0.693262
Target:  5'- uACCUGcGGCGGGU-GCugGa--GUGGg -3'
miRNA:   3'- cUGGAC-CCGCCCGuCGugCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 64895 0.66 0.673625
Target:  5'- cGCC-GGGUccaGCAGCGCGUgguucaGCGCGGc -3'
miRNA:   3'- cUGGaCCCGcc-CGUCGUGCA------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 103605 0.66 0.663755
Target:  5'- uGGCC-GcGGC-GGCAGCGCGggagGCgGCGGc -3'
miRNA:   3'- -CUGGaC-CCGcCCGUCGUGCa---UG-CGCC- -5'
23764 3' -61 NC_005261.1 + 109865 0.66 0.683464
Target:  5'- -uCCUGG--GGGCAGCGgGgccCGCGGg -3'
miRNA:   3'- cuGGACCcgCCCGUCGUgCau-GCGCC- -5'
23764 3' -61 NC_005261.1 + 34198 0.66 0.663755
Target:  5'- gGGCCgGaGGCaGaCGGCGCGUcggACGCGGa -3'
miRNA:   3'- -CUGGaC-CCGcCcGUCGUGCA---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 34927 0.66 0.693262
Target:  5'- cGGCCacgcgggGGGCGGcCGGCGCG-ACcCGGg -3'
miRNA:   3'- -CUGGa------CCCGCCcGUCGUGCaUGcGCC- -5'
23764 3' -61 NC_005261.1 + 22091 0.66 0.653862
Target:  5'- cGCCgcguggGGGCGGGagGGCG-GUGUGCGGa -3'
miRNA:   3'- cUGGa-----CCCGCCCg-UCGUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 23938 0.66 0.673625
Target:  5'- cACCUcGcGGCGGGUucgGGguCGUcggcACGCGGu -3'
miRNA:   3'- cUGGA-C-CCGCCCG---UCguGCA----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 53463 0.66 0.673625
Target:  5'- cGCC-GGGCGGgacGCAGCAgGcGCGCa- -3'
miRNA:   3'- cUGGaCCCGCC---CGUCGUgCaUGCGcc -5'
23764 3' -61 NC_005261.1 + 23805 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 80054 0.66 0.673625
Target:  5'- cGCCacugGcGGCGGGCgcggGGgGCGUgggggACGCGGa -3'
miRNA:   3'- cUGGa---C-CCGCCCG----UCgUGCA-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 148 0.66 0.693262
Target:  5'- gGGCUggcaGGGCuGGCGGa--GUugGCGGg -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCgugCAugCGCC- -5'
23764 3' -61 NC_005261.1 + 71069 0.66 0.683464
Target:  5'- cGCCgcgcGGCGGGCGGgGCGU-C-CGGg -3'
miRNA:   3'- cUGGac--CCGCCCGUCgUGCAuGcGCC- -5'
23764 3' -61 NC_005261.1 + 81232 0.66 0.673625
Target:  5'- cGCCcgaggGcGGCGGGCA-CACGUaaaaGCGCGa -3'
miRNA:   3'- cUGGa----C-CCGCCCGUcGUGCA----UGCGCc -5'
23764 3' -61 NC_005261.1 + 98823 0.66 0.683464
Target:  5'- uGCCggaagacGGG-GGGguGgGCGUACaGCGGg -3'
miRNA:   3'- cUGGa------CCCgCCCguCgUGCAUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 112059 0.66 0.663755
Target:  5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3'
miRNA:   3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 90394 0.66 0.683464
Target:  5'- cGCCggcgGGGCuGGCgcccGGCGCGgacUACGCGa -3'
miRNA:   3'- cUGGa---CCCGcCCG----UCGUGC---AUGCGCc -5'
23764 3' -61 NC_005261.1 + 105364 0.66 0.683464
Target:  5'- aGGCCgugacaGGCGGcGCGcGCGgGUGCGCGc -3'
miRNA:   3'- -CUGGac----CCGCC-CGU-CGUgCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 117314 0.66 0.683464
Target:  5'- aGCCccGGcGCGGGCAGCAa--GCGCa- -3'
miRNA:   3'- cUGGa-CC-CGCCCGUCGUgcaUGCGcc -5'
23764 3' -61 NC_005261.1 + 29175 0.66 0.673625
Target:  5'- aGGCCaGGGCccGGcgcccucgccGCGGCGCccGCGCGGg -3'
miRNA:   3'- -CUGGaCCCG--CC----------CGUCGUGcaUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.