miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 112059 0.66 0.663755
Target:  5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3'
miRNA:   3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 123414 0.66 0.653862
Target:  5'- cGGCCagGGGCGGGCucGCcACGggcCGCa- -3'
miRNA:   3'- -CUGGa-CCCGCCCGu-CG-UGCau-GCGcc -5'
23764 3' -61 NC_005261.1 + 32918 0.66 0.703013
Target:  5'- cGCgUGGG-GGGCGGCggGCGggggggGgGCGGg -3'
miRNA:   3'- cUGgACCCgCCCGUCG--UGCa-----UgCGCC- -5'
23764 3' -61 NC_005261.1 + 58085 0.66 0.693262
Target:  5'- cGCCaGGGCccgcguccucGGGCGGCACcagccGCGCGa -3'
miRNA:   3'- cUGGaCCCG----------CCCGUCGUGca---UGCGCc -5'
23764 3' -61 NC_005261.1 + 131596 0.66 0.703013
Target:  5'- aGGCCUacGCGcGcGCGcGCACGUACGCGc -3'
miRNA:   3'- -CUGGAccCGC-C-CGU-CGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 23805 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 71069 0.66 0.683464
Target:  5'- cGCCgcgcGGCGGGCGGgGCGU-C-CGGg -3'
miRNA:   3'- cUGGac--CCGCCCGUCgUGCAuGcGCC- -5'
23764 3' -61 NC_005261.1 + 68101 0.66 0.703013
Target:  5'- aGGCCgugaaguucGGGCuGGaGCuGCGCGggccgcgGCGCGGc -3'
miRNA:   3'- -CUGGa--------CCCG-CC-CGuCGUGCa------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 34927 0.66 0.693262
Target:  5'- cGGCCacgcgggGGGCGGcCGGCGCG-ACcCGGg -3'
miRNA:   3'- -CUGGa------CCCGCCcGUCGUGCaUGcGCC- -5'
23764 3' -61 NC_005261.1 + 98563 0.66 0.663755
Target:  5'- -uCC--GGCGGGCGGC-CGUccucCGCGGg -3'
miRNA:   3'- cuGGacCCGCCCGUCGuGCAu---GCGCC- -5'
23764 3' -61 NC_005261.1 + 105364 0.66 0.683464
Target:  5'- aGGCCgugacaGGCGGcGCGcGCGgGUGCGCGc -3'
miRNA:   3'- -CUGGac----CCGCC-CGU-CGUgCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 111835 0.67 0.634032
Target:  5'- -cCCUGaGGuCGcGG-AGCGCGUGCGCGc -3'
miRNA:   3'- cuGGAC-CC-GC-CCgUCGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 74686 0.67 0.624111
Target:  5'- cGACCgcgcgGGaGCuGGCcgccGCGCGgGCGCGGa -3'
miRNA:   3'- -CUGGa----CC-CGcCCGu---CGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 12321 0.67 0.624111
Target:  5'- aGCC--GGCGGGC-GCGCGcuuggccgGCGCGGc -3'
miRNA:   3'- cUGGacCCGCCCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 78 0.67 0.643951
Target:  5'- cGCggGGGCGGGguGCGgG-GCGCGc -3'
miRNA:   3'- cUGgaCCCGCCCguCGUgCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 31817 0.67 0.643951
Target:  5'- uGGCCUGaGCGGcGCGcGCugGcGCGCGc -3'
miRNA:   3'- -CUGGACcCGCC-CGU-CGugCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 27246 0.67 0.614197
Target:  5'- cGCCUGGGgugGGGCGGggUGUGCG-GGc -3'
miRNA:   3'- cUGGACCCg--CCCGUCguGCAUGCgCC- -5'
23764 3' -61 NC_005261.1 + 98046 0.67 0.614197
Target:  5'- --aCUGGcggccGCGGGCGGCGgGacCGCGGg -3'
miRNA:   3'- cugGACC-----CGCCCGUCGUgCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 55709 0.67 0.643951
Target:  5'- cGCUUGGGCGGcCA-CGCGUGucucuauguCGCGGg -3'
miRNA:   3'- cUGGACCCGCCcGUcGUGCAU---------GCGCC- -5'
23764 3' -61 NC_005261.1 + 96135 0.67 0.634032
Target:  5'- cGACCUGcGGC-GGCGGCAcgagaaggccguCGUGcCGCGc -3'
miRNA:   3'- -CUGGAC-CCGcCCGUCGU------------GCAU-GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.