Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23764 | 3' | -61 | NC_005261.1 | + | 38266 | 0.85 | 0.04785 |
Target: 5'- aGCCUGGGCuggGGGCGGCugGUgcACGCGGu -3' miRNA: 3'- cUGGACCCG---CCCGUCGugCA--UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 74748 | 0.79 | 0.13096 |
Target: 5'- aACCUGcuGGCGcGGCAGCGCGccacagGCGCGGa -3' miRNA: 3'- cUGGAC--CCGC-CCGUCGUGCa-----UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 12744 | 0.78 | 0.152123 |
Target: 5'- -cCCUGGGCGGGCccGGCGagguCGUAgGCGGc -3' miRNA: 3'- cuGGACCCGCCCG--UCGU----GCAUgCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 110466 | 0.77 | 0.176345 |
Target: 5'- uGCCUGGGCGGGCuGCucuCGUggaccACGCaGGa -3' miRNA: 3'- cUGGACCCGCCCGuCGu--GCA-----UGCG-CC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 21819 | 0.77 | 0.172082 |
Target: 5'- gGGCCcGcGGCGGGC-GCGCGUGCggGCGGg -3' miRNA: 3'- -CUGGaC-CCGCCCGuCGUGCAUG--CGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 90434 | 0.77 | 0.167912 |
Target: 5'- cGACgUGGGCGGGCGcGCGCugcacuuuGUGCGCGc -3' miRNA: 3'- -CUGgACCCGCCCGU-CGUG--------CAUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 94872 | 0.77 | 0.159842 |
Target: 5'- cGGCCcGGGCGGGCGGCccGCGUGCaGCc- -3' miRNA: 3'- -CUGGaCCCGCCCGUCG--UGCAUG-CGcc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 3539 | 0.76 | 0.208886 |
Target: 5'- cGCCUcGGCGcGCAGCGCGgcggGCGCGGc -3' miRNA: 3'- cUGGAcCCGCcCGUCGUGCa---UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 126943 | 0.76 | 0.20739 |
Target: 5'- cGGCCagGGGCGccgggcgcgggggcGGCAGCGCGaaccGCGCGGg -3' miRNA: 3'- -CUGGa-CCCGC--------------CCGUCGUGCa---UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 7195 | 0.76 | 0.194347 |
Target: 5'- ----aGGGgGGGguGCGCGUGCGUGGc -3' miRNA: 3'- cuggaCCCgCCCguCGUGCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 1186 | 0.76 | 0.194347 |
Target: 5'- cGGCCgGGGCcgGGGCcgGGCGCG-GCGCGGa -3' miRNA: 3'- -CUGGaCCCG--CCCG--UCGUGCaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 73478 | 0.76 | 0.189701 |
Target: 5'- -cCCUGGGCcgcGGcGCGGCGCGcggACGCGGc -3' miRNA: 3'- cuGGACCCG---CC-CGUCGUGCa--UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 83675 | 0.76 | 0.185153 |
Target: 5'- cGCCUGGGCGcGCAGCGCGccgccgAgGCGGc -3' miRNA: 3'- cUGGACCCGCcCGUCGUGCa-----UgCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 37229 | 0.76 | 0.185153 |
Target: 5'- gGGCUUGcGCGGcGCGGCGCGUggacaGCGCGGa -3' miRNA: 3'- -CUGGACcCGCC-CGUCGUGCA-----UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 74843 | 0.75 | 0.213936 |
Target: 5'- gGACCUGGG-GaGGCGGCGCGccGgGCGGa -3' miRNA: 3'- -CUGGACCCgC-CCGUCGUGCa-UgCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 113009 | 0.75 | 0.221184 |
Target: 5'- uGAUgCUGGGCGGGCAGUAccccacagagcgggcCGcGCGCGGc -3' miRNA: 3'- -CUG-GACCCGCCCGUCGU---------------GCaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 136905 | 0.74 | 0.258203 |
Target: 5'- uGGCgUGGuGUGGGCcGCGCGgcCGCGGc -3' miRNA: 3'- -CUGgACC-CGCCCGuCGUGCauGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 123163 | 0.74 | 0.258203 |
Target: 5'- gGGCg-GGGCGGGC-GCGCGgGCGUGGu -3' miRNA: 3'- -CUGgaCCCGCCCGuCGUGCaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 106859 | 0.74 | 0.252284 |
Target: 5'- cGCCUGGG-GGGCGG-GCGUcCGCGGc -3' miRNA: 3'- cUGGACCCgCCCGUCgUGCAuGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 98303 | 0.74 | 0.260602 |
Target: 5'- cGGCCUcggGGGCGGGCgccgccgccagcggcGGCGCGccccgugucgACGCGGg -3' miRNA: 3'- -CUGGA---CCCGCCCG---------------UCGUGCa---------UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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