Results 21 - 40 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23764 | 3' | -61 | NC_005261.1 | + | 116476 | 0.74 | 0.264235 |
Target: 5'- uGCC-GGcGCGGGCGGgGCGggcGCGCGGu -3' miRNA: 3'- cUGGaCC-CGCCCGUCgUGCa--UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 98303 | 0.74 | 0.260602 |
Target: 5'- cGGCCUcggGGGCGGGCgccgccgccagcggcGGCGCGccccgugucgACGCGGg -3' miRNA: 3'- -CUGGA---CCCGCCCG---------------UCGUGCa---------UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 136905 | 0.74 | 0.258203 |
Target: 5'- uGGCgUGGuGUGGGCcGCGCGgcCGCGGc -3' miRNA: 3'- -CUGgACC-CGCCCGuCGUGCauGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 123163 | 0.74 | 0.258203 |
Target: 5'- gGGCg-GGGCGGGC-GCGCGgGCGUGGu -3' miRNA: 3'- -CUGgaCCCGCCCGuCGUGCaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 106859 | 0.74 | 0.252284 |
Target: 5'- cGCCUGGG-GGGCGG-GCGUcCGCGGc -3' miRNA: 3'- cUGGACCCgCCCGUCgUGCAuGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 27377 | 0.74 | 0.246478 |
Target: 5'- aGGCC--GGUGGGCAGgGgGUACGCGGc -3' miRNA: 3'- -CUGGacCCGCCCGUCgUgCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 109113 | 0.73 | 0.316637 |
Target: 5'- cGGCCaugaGGGC-GGCGGUGuCGUGCGCGGc -3' miRNA: 3'- -CUGGa---CCCGcCCGUCGU-GCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 98669 | 0.73 | 0.316637 |
Target: 5'- aGGCgaGGGCGGGCuccgccggGGC-CGgagGCGCGGc -3' miRNA: 3'- -CUGgaCCCGCCCG--------UCGuGCa--UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 28774 | 0.73 | 0.309679 |
Target: 5'- cGCCUGGGCc-GCGGCGCGggcgcuCGCGGc -3' miRNA: 3'- cUGGACCCGccCGUCGUGCau----GCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 10018 | 0.73 | 0.302838 |
Target: 5'- cGACC-GGGCGGGCcuCGCGU-CGgGGg -3' miRNA: 3'- -CUGGaCCCGCCCGucGUGCAuGCgCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 37179 | 0.73 | 0.302838 |
Target: 5'- cGCCUGGGCGcugcuGGCGGCGC-UGCugGCGGc -3' miRNA: 3'- cUGGACCCGC-----CCGUCGUGcAUG--CGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 113312 | 0.73 | 0.296114 |
Target: 5'- gGGCCUGGGCccGGCuGCGCGagaaggucGCGCGGc -3' miRNA: 3'- -CUGGACCCGc-CCGuCGUGCa-------UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 64100 | 0.72 | 0.352422 |
Target: 5'- cGCCcacaaagUGcGGCacGGGCGGCACGUgccGCGCGGc -3' miRNA: 3'- cUGG-------AC-CCG--CCCGUCGUGCA---UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 59460 | 0.72 | 0.345639 |
Target: 5'- cGGCCgcggcgucGGG-GGGCAGCGCcgGCGCGGc -3' miRNA: 3'- -CUGGa-------CCCgCCCGUCGUGcaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 134193 | 0.72 | 0.345639 |
Target: 5'- gGGCCUGGcGCGGcuCGGCGCGcggguCGCGGc -3' miRNA: 3'- -CUGGACC-CGCCc-GUCGUGCau---GCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 75573 | 0.72 | 0.338213 |
Target: 5'- gGGCgCUGGGC-GGCGGCGCGgcgcucGCGCGc -3' miRNA: 3'- -CUG-GACCCGcCCGUCGUGCa-----UGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 89397 | 0.72 | 0.337477 |
Target: 5'- cGACCUGccGCcGGCcuuccucGGCGCGUGCGCGGc -3' miRNA: 3'- -CUGGACc-CGcCCG-------UCGUGCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 3931 | 0.72 | 0.330904 |
Target: 5'- cGGCCUccGGGUaGGCcaugGGCGCGUACGCGc -3' miRNA: 3'- -CUGGA--CCCGcCCG----UCGUGCAUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 27512 | 0.72 | 0.326575 |
Target: 5'- -gUCUGGGCGGGcCAGCugGgcccgcccucgcaccUAgGCGGg -3' miRNA: 3'- cuGGACCCGCCC-GUCGugC---------------AUgCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 42838 | 0.72 | 0.353181 |
Target: 5'- cACCUGGGCGauGGCAGaguGCGaGCGCGu -3' miRNA: 3'- cUGGACCCGC--CCGUCg--UGCaUGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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