miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 38266 0.85 0.04785
Target:  5'- aGCCUGGGCuggGGGCGGCugGUgcACGCGGu -3'
miRNA:   3'- cUGGACCCG---CCCGUCGugCA--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 74748 0.79 0.13096
Target:  5'- aACCUGcuGGCGcGGCAGCGCGccacagGCGCGGa -3'
miRNA:   3'- cUGGAC--CCGC-CCGUCGUGCa-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 12744 0.78 0.152123
Target:  5'- -cCCUGGGCGGGCccGGCGagguCGUAgGCGGc -3'
miRNA:   3'- cuGGACCCGCCCG--UCGU----GCAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 94872 0.77 0.159842
Target:  5'- cGGCCcGGGCGGGCGGCccGCGUGCaGCc- -3'
miRNA:   3'- -CUGGaCCCGCCCGUCG--UGCAUG-CGcc -5'
23764 3' -61 NC_005261.1 + 90434 0.77 0.167912
Target:  5'- cGACgUGGGCGGGCGcGCGCugcacuuuGUGCGCGc -3'
miRNA:   3'- -CUGgACCCGCCCGU-CGUG--------CAUGCGCc -5'
23764 3' -61 NC_005261.1 + 21819 0.77 0.172082
Target:  5'- gGGCCcGcGGCGGGC-GCGCGUGCggGCGGg -3'
miRNA:   3'- -CUGGaC-CCGCCCGuCGUGCAUG--CGCC- -5'
23764 3' -61 NC_005261.1 + 110466 0.77 0.176345
Target:  5'- uGCCUGGGCGGGCuGCucuCGUggaccACGCaGGa -3'
miRNA:   3'- cUGGACCCGCCCGuCGu--GCA-----UGCG-CC- -5'
23764 3' -61 NC_005261.1 + 37229 0.76 0.185153
Target:  5'- gGGCUUGcGCGGcGCGGCGCGUggacaGCGCGGa -3'
miRNA:   3'- -CUGGACcCGCC-CGUCGUGCA-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 83675 0.76 0.185153
Target:  5'- cGCCUGGGCGcGCAGCGCGccgccgAgGCGGc -3'
miRNA:   3'- cUGGACCCGCcCGUCGUGCa-----UgCGCC- -5'
23764 3' -61 NC_005261.1 + 73478 0.76 0.189701
Target:  5'- -cCCUGGGCcgcGGcGCGGCGCGcggACGCGGc -3'
miRNA:   3'- cuGGACCCG---CC-CGUCGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 7195 0.76 0.194347
Target:  5'- ----aGGGgGGGguGCGCGUGCGUGGc -3'
miRNA:   3'- cuggaCCCgCCCguCGUGCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 1186 0.76 0.194347
Target:  5'- cGGCCgGGGCcgGGGCcgGGCGCG-GCGCGGa -3'
miRNA:   3'- -CUGGaCCCG--CCCG--UCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 126943 0.76 0.20739
Target:  5'- cGGCCagGGGCGccgggcgcgggggcGGCAGCGCGaaccGCGCGGg -3'
miRNA:   3'- -CUGGa-CCCGC--------------CCGUCGUGCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 3539 0.76 0.208886
Target:  5'- cGCCUcGGCGcGCAGCGCGgcggGCGCGGc -3'
miRNA:   3'- cUGGAcCCGCcCGUCGUGCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 74843 0.75 0.213936
Target:  5'- gGACCUGGG-GaGGCGGCGCGccGgGCGGa -3'
miRNA:   3'- -CUGGACCCgC-CCGUCGUGCa-UgCGCC- -5'
23764 3' -61 NC_005261.1 + 113009 0.75 0.221184
Target:  5'- uGAUgCUGGGCGGGCAGUAccccacagagcgggcCGcGCGCGGc -3'
miRNA:   3'- -CUG-GACCCGCCCGUCGU---------------GCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 27377 0.74 0.246478
Target:  5'- aGGCC--GGUGGGCAGgGgGUACGCGGc -3'
miRNA:   3'- -CUGGacCCGCCCGUCgUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 106859 0.74 0.252284
Target:  5'- cGCCUGGG-GGGCGG-GCGUcCGCGGc -3'
miRNA:   3'- cUGGACCCgCCCGUCgUGCAuGCGCC- -5'
23764 3' -61 NC_005261.1 + 123163 0.74 0.258203
Target:  5'- gGGCg-GGGCGGGC-GCGCGgGCGUGGu -3'
miRNA:   3'- -CUGgaCCCGCCCGuCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 136905 0.74 0.258203
Target:  5'- uGGCgUGGuGUGGGCcGCGCGgcCGCGGc -3'
miRNA:   3'- -CUGgACC-CGCCCGuCGUGCauGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.