miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 98303 0.74 0.260602
Target:  5'- cGGCCUcggGGGCGGGCgccgccgccagcggcGGCGCGccccgugucgACGCGGg -3'
miRNA:   3'- -CUGGA---CCCGCCCG---------------UCGUGCa---------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 116476 0.74 0.264235
Target:  5'- uGCC-GGcGCGGGCGGgGCGggcGCGCGGu -3'
miRNA:   3'- cUGGaCC-CGCCCGUCgUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 38942 0.74 0.264235
Target:  5'- cGGCC-GGGCGGGCcGCG-GcGCGCGGg -3'
miRNA:   3'- -CUGGaCCCGCCCGuCGUgCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 32176 0.74 0.27664
Target:  5'- uACCUGGccuGCGGGCGGCGC--GCGCuGGa -3'
miRNA:   3'- cUGGACC---CGCCCGUCGUGcaUGCG-CC- -5'
23764 3' -61 NC_005261.1 + 69526 0.74 0.27664
Target:  5'- gGAgCUGGcGCGGGCgcuGGCGCGcGCGCuGGg -3'
miRNA:   3'- -CUgGACC-CGCCCG---UCGUGCaUGCG-CC- -5'
23764 3' -61 NC_005261.1 + 97723 0.74 0.27664
Target:  5'- uGGCCcGGGCGGGCuaacGGCugGcagGgGCGGg -3'
miRNA:   3'- -CUGGaCCCGCCCG----UCGugCa--UgCGCC- -5'
23764 3' -61 NC_005261.1 + 113312 0.73 0.296114
Target:  5'- gGGCCUGGGCccGGCuGCGCGagaaggucGCGCGGc -3'
miRNA:   3'- -CUGGACCCGc-CCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 37179 0.73 0.302838
Target:  5'- cGCCUGGGCGcugcuGGCGGCGC-UGCugGCGGc -3'
miRNA:   3'- cUGGACCCGC-----CCGUCGUGcAUG--CGCC- -5'
23764 3' -61 NC_005261.1 + 10018 0.73 0.302838
Target:  5'- cGACC-GGGCGGGCcuCGCGU-CGgGGg -3'
miRNA:   3'- -CUGGaCCCGCCCGucGUGCAuGCgCC- -5'
23764 3' -61 NC_005261.1 + 28774 0.73 0.309679
Target:  5'- cGCCUGGGCc-GCGGCGCGggcgcuCGCGGc -3'
miRNA:   3'- cUGGACCCGccCGUCGUGCau----GCGCC- -5'
23764 3' -61 NC_005261.1 + 109113 0.73 0.316637
Target:  5'- cGGCCaugaGGGC-GGCGGUGuCGUGCGCGGc -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCGU-GCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 98669 0.73 0.316637
Target:  5'- aGGCgaGGGCGGGCuccgccggGGC-CGgagGCGCGGc -3'
miRNA:   3'- -CUGgaCCCGCCCG--------UCGuGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 13667 0.72 0.323712
Target:  5'- cGCCgcgGGGgGGGCgcggGGCGCGcggGCGUGGg -3'
miRNA:   3'- cUGGa--CCCgCCCG----UCGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 27512 0.72 0.326575
Target:  5'- -gUCUGGGCGGGcCAGCugGgcccgcccucgcaccUAgGCGGg -3'
miRNA:   3'- cuGGACCCGCCC-GUCGugC---------------AUgCGCC- -5'
23764 3' -61 NC_005261.1 + 3931 0.72 0.330904
Target:  5'- cGGCCUccGGGUaGGCcaugGGCGCGUACGCGc -3'
miRNA:   3'- -CUGGA--CCCGcCCG----UCGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 89397 0.72 0.337477
Target:  5'- cGACCUGccGCcGGCcuuccucGGCGCGUGCGCGGc -3'
miRNA:   3'- -CUGGACc-CGcCCG-------UCGUGCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 75573 0.72 0.338213
Target:  5'- gGGCgCUGGGC-GGCGGCGCGgcgcucGCGCGc -3'
miRNA:   3'- -CUG-GACCCGcCCGUCGUGCa-----UGCGCc -5'
23764 3' -61 NC_005261.1 + 134193 0.72 0.345639
Target:  5'- gGGCCUGGcGCGGcuCGGCGCGcggguCGCGGc -3'
miRNA:   3'- -CUGGACC-CGCCc-GUCGUGCau---GCGCC- -5'
23764 3' -61 NC_005261.1 + 59460 0.72 0.345639
Target:  5'- cGGCCgcggcgucGGG-GGGCAGCGCcgGCGCGGc -3'
miRNA:   3'- -CUGGa-------CCCgCCCGUCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 64100 0.72 0.352422
Target:  5'- cGCCcacaaagUGcGGCacGGGCGGCACGUgccGCGCGGc -3'
miRNA:   3'- cUGG-------AC-CCG--CCCGUCGUGCA---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.