miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 42838 0.72 0.353181
Target:  5'- cACCUGGGCGauGGCAGaguGCGaGCGCGu -3'
miRNA:   3'- cUGGACCCGC--CCGUCg--UGCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 59781 0.72 0.353181
Target:  5'- cGGCCgcagcgacgGcGGCGGGCGGCAgGccgGCGUGGc -3'
miRNA:   3'- -CUGGa--------C-CCGCCCGUCGUgCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 4397 0.72 0.353181
Target:  5'- cGGCC-GGGCGgcGGCGGCGCGcUGC-CGGg -3'
miRNA:   3'- -CUGGaCCCGC--CCGUCGUGC-AUGcGCC- -5'
23764 3' -61 NC_005261.1 + 88714 0.72 0.360839
Target:  5'- uGACCUGGccuGCGGGguGCGCG-AUGaGGg -3'
miRNA:   3'- -CUGGACC---CGCCCguCGUGCaUGCgCC- -5'
23764 3' -61 NC_005261.1 + 126080 0.71 0.368612
Target:  5'- cGGCCUcGGCGGGCGcgcccaucuucGCGCGUACuuGGu -3'
miRNA:   3'- -CUGGAcCCGCCCGU-----------CGUGCAUGcgCC- -5'
23764 3' -61 NC_005261.1 + 34352 0.71 0.368612
Target:  5'- cGGCCgacgGGGcCGGGCGccgcgcggcgccGCGCGcagACGCGGc -3'
miRNA:   3'- -CUGGa---CCC-GCCCGU------------CGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 74485 0.71 0.368612
Target:  5'- uGCCUGGGCGGGaucuCGGCGCucuucgGgGCGGc -3'
miRNA:   3'- cUGGACCCGCCC----GUCGUGca----UgCGCC- -5'
23764 3' -61 NC_005261.1 + 9163 0.71 0.376498
Target:  5'- gGACCUGGcGCcgcccGGCcaGGUACGUGgGCGGg -3'
miRNA:   3'- -CUGGACC-CGc----CCG--UCGUGCAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 74052 0.71 0.384498
Target:  5'- cGCCgggGGGCuGcGGCAGCuGCGcgACGCGGc -3'
miRNA:   3'- cUGGa--CCCG-C-CCGUCG-UGCa-UGCGCC- -5'
23764 3' -61 NC_005261.1 + 121796 0.71 0.384498
Target:  5'- cGGgCUGGGCaGGgGGCGCGUGgcugggcucUGCGGg -3'
miRNA:   3'- -CUgGACCCGcCCgUCGUGCAU---------GCGCC- -5'
23764 3' -61 NC_005261.1 + 99084 0.71 0.384498
Target:  5'- aGGCa-GGGCGGcGCGGCGCGca-GCGGc -3'
miRNA:   3'- -CUGgaCCCGCC-CGUCGUGCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 75403 0.71 0.384498
Target:  5'- cGACgaGGGCGcGGCccGGCGCGUgcaguACGCGu -3'
miRNA:   3'- -CUGgaCCCGC-CCG--UCGUGCA-----UGCGCc -5'
23764 3' -61 NC_005261.1 + 45614 0.71 0.384498
Target:  5'- cACC--GGCGGcGCGGCGCG-GCGCGGc -3'
miRNA:   3'- cUGGacCCGCC-CGUCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 4497 0.71 0.384498
Target:  5'- aGCCUGcGCGGGCcccagucGCGCGcccGCGCGGg -3'
miRNA:   3'- cUGGACcCGCCCGu------CGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 128101 0.71 0.39261
Target:  5'- ----cGGGCGaGCGGCGCG-GCGCGGg -3'
miRNA:   3'- cuggaCCCGCcCGUCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 107591 0.71 0.395885
Target:  5'- aGGCCgGGucccgcaggacggcaGCGGGCacAGCGucCGUGCGCGGg -3'
miRNA:   3'- -CUGGaCC---------------CGCCCG--UCGU--GCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 65390 0.71 0.395885
Target:  5'- uACCUGcGGCGGGUugGGCggccccggcagcuccACGUcCGCGGg -3'
miRNA:   3'- cUGGAC-CCGCCCG--UCG---------------UGCAuGCGCC- -5'
23764 3' -61 NC_005261.1 + 15433 0.71 0.398354
Target:  5'- cGGCCgGGcGCGGGCcggcgauggagaagAGCACGUGguucucgacCGCGGc -3'
miRNA:   3'- -CUGGaCC-CGCCCG--------------UCGUGCAU---------GCGCC- -5'
23764 3' -61 NC_005261.1 + 33595 0.71 0.400832
Target:  5'- cACCagGGGCGGcGcCGGCGCGgGCgGCGGg -3'
miRNA:   3'- cUGGa-CCCGCC-C-GUCGUGCaUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 89095 0.71 0.400832
Target:  5'- cGGCCcGGGCGcGCuGGCGCGcGCGUGGc -3'
miRNA:   3'- -CUGGaCCCGCcCG-UCGUGCaUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.