miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 117314 0.66 0.683464
Target:  5'- aGCCccGGcGCGGGCAGCAa--GCGCa- -3'
miRNA:   3'- cUGGa-CC-CGCCCGUCGUgcaUGCGcc -5'
23764 3' -61 NC_005261.1 + 23862 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 42351 0.66 0.682482
Target:  5'- gGAUgCUGGGCGGGCuGGCcgcgcaaACGUAC-UGGu -3'
miRNA:   3'- -CUG-GACCCGCCCG-UCG-------UGCAUGcGCC- -5'
23764 3' -61 NC_005261.1 + 97401 0.66 0.679533
Target:  5'- cGCCUGccgcgggcuuGGCGGGCGcGC-CGggccugcccuuggGCGCGGg -3'
miRNA:   3'- cUGGAC----------CCGCCCGU-CGuGCa------------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 23938 0.66 0.673625
Target:  5'- cACCUcGcGGCGGGUucgGGguCGUcggcACGCGGu -3'
miRNA:   3'- cUGGA-C-CCGCCCG---UCguGCA----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 64895 0.66 0.673625
Target:  5'- cGCC-GGGUccaGCAGCGCGUgguucaGCGCGGc -3'
miRNA:   3'- cUGGaCCCGcc-CGUCGUGCA------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 43354 0.66 0.673625
Target:  5'- uGCCUGGGgcuggugccgcUGcGGCGGCAuCGgccuCGCGGu -3'
miRNA:   3'- cUGGACCC-----------GC-CCGUCGU-GCau--GCGCC- -5'
23764 3' -61 NC_005261.1 + 81232 0.66 0.673625
Target:  5'- cGCCcgaggGcGGCGGGCA-CACGUaaaaGCGCGa -3'
miRNA:   3'- cUGGa----C-CCGCCCGUcGUGCA----UGCGCc -5'
23764 3' -61 NC_005261.1 + 19497 0.66 0.673625
Target:  5'- cGAUCc-GGCGGGaguGCAgGUACGCGa -3'
miRNA:   3'- -CUGGacCCGCCCgu-CGUgCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 29175 0.66 0.673625
Target:  5'- aGGCCaGGGCccGGcgcccucgccGCGGCGCccGCGCGGg -3'
miRNA:   3'- -CUGGaCCCG--CC----------CGUCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 58986 0.66 0.673625
Target:  5'- aGGCCUccaCGGGCGGCG-GUGCGcCGGg -3'
miRNA:   3'- -CUGGAcccGCCCGUCGUgCAUGC-GCC- -5'
23764 3' -61 NC_005261.1 + 55178 0.66 0.673625
Target:  5'- cGGCUcgcgGGGCGgaucGGC-GCACGgcguaGCGCGGa -3'
miRNA:   3'- -CUGGa---CCCGC----CCGuCGUGCa----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 53463 0.66 0.673625
Target:  5'- cGCC-GGGCGGgacGCAGCAgGcGCGCa- -3'
miRNA:   3'- cUGGaCCCGCC---CGUCGUgCaUGCGcc -5'
23764 3' -61 NC_005261.1 + 80054 0.66 0.673625
Target:  5'- cGCCacugGcGGCGGGCgcggGGgGCGUgggggACGCGGa -3'
miRNA:   3'- cUGGa---C-CCGCCCG----UCgUGCA-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 32355 0.66 0.670667
Target:  5'- gGACCaGGGCccgcgggagacgcuGGuGCAgGCGCG-GCGCGGc -3'
miRNA:   3'- -CUGGaCCCG--------------CC-CGU-CGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 43110 0.66 0.669681
Target:  5'- gGACgUGGcGCGGGauuGGCGCGccuacacacgcgcGCGCGGc -3'
miRNA:   3'- -CUGgACC-CGCCCg--UCGUGCa------------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 34198 0.66 0.663755
Target:  5'- gGGCCgGaGGCaGaCGGCGCGUcggACGCGGa -3'
miRNA:   3'- -CUGGaC-CCGcCcGUCGUGCA---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 112059 0.66 0.663755
Target:  5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3'
miRNA:   3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 103605 0.66 0.663755
Target:  5'- uGGCC-GcGGC-GGCAGCGCGggagGCgGCGGc -3'
miRNA:   3'- -CUGGaC-CCGcCCGUCGUGCa---UG-CGCC- -5'
23764 3' -61 NC_005261.1 + 132896 0.66 0.663755
Target:  5'- aGCCgGGcgccGCGGGCGGCGcCGaGCgGCGGc -3'
miRNA:   3'- cUGGaCC----CGCCCGUCGU-GCaUG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.