Results 41 - 60 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23764 | 3' | -61 | NC_005261.1 | + | 112059 | 0.66 | 0.663755 |
Target: 5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3' miRNA: 3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 132896 | 0.66 | 0.663755 |
Target: 5'- aGCCgGGcgccGCGGGCGGCGcCGaGCgGCGGc -3' miRNA: 3'- cUGGaCC----CGCCCGUCGU-GCaUG-CGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 13084 | 0.66 | 0.657821 |
Target: 5'- cGGCCcgucGGCGGGCGGCgggcucggcucggggGCGUcggcggcCGCGGg -3' miRNA: 3'- -CUGGac--CCGCCCGUCG---------------UGCAu------GCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 126695 | 0.66 | 0.653862 |
Target: 5'- aGGCCggcGGuGCGGGaAGCggcugguucGCGUGCGCGu -3' miRNA: 3'- -CUGGa--CC-CGCCCgUCG---------UGCAUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 108004 | 0.66 | 0.653862 |
Target: 5'- cGCCgucGGGCagccccagcaGcGGCAGCACGUcCGCGu -3' miRNA: 3'- cUGGa--CCCG----------C-CCGUCGUGCAuGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 22091 | 0.66 | 0.653862 |
Target: 5'- cGCCgcguggGGGCGGGagGGCG-GUGUGCGGa -3' miRNA: 3'- cUGGa-----CCCGCCCg-UCGUgCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 113886 | 0.66 | 0.653862 |
Target: 5'- cACCUGuagcggcgacgcGGCGGGCgcgauggccgaGGCAgCGgGCGCGGc -3' miRNA: 3'- cUGGAC------------CCGCCCG-----------UCGU-GCaUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 123414 | 0.66 | 0.653862 |
Target: 5'- cGGCCagGGGCGGGCucGCcACGggcCGCa- -3' miRNA: 3'- -CUGGa-CCCGCCCGu-CG-UGCau-GCGcc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 1929 | 0.66 | 0.653862 |
Target: 5'- cGCaCUGcgccGCGGGCAGCACcgcgGCGCGc -3' miRNA: 3'- cUG-GACc---CGCCCGUCGUGca--UGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 31670 | 0.66 | 0.653862 |
Target: 5'- uGCCUGcGGCuGGccGCGGCGCGgcgGCGGc -3' miRNA: 3'- cUGGAC-CCG-CC--CGUCGUGCaugCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 48028 | 0.66 | 0.653862 |
Target: 5'- aGAgCaGGGCGaGG-AGCACGcgcGCGCGGu -3' miRNA: 3'- -CUgGaCCCGC-CCgUCGUGCa--UGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 65537 | 0.67 | 0.643951 |
Target: 5'- cGGCCgc-GCGGGCAGCagcGCGUGCcagGCGu -3' miRNA: 3'- -CUGGaccCGCCCGUCG---UGCAUG---CGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 55709 | 0.67 | 0.643951 |
Target: 5'- cGCUUGGGCGGcCA-CGCGUGucucuauguCGCGGg -3' miRNA: 3'- cUGGACCCGCCcGUcGUGCAU---------GCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 31817 | 0.67 | 0.643951 |
Target: 5'- uGGCCUGaGCGGcGCGcGCugGcGCGCGc -3' miRNA: 3'- -CUGGACcCGCC-CGU-CGugCaUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 78 | 0.67 | 0.643951 |
Target: 5'- cGCggGGGCGGGguGCGgG-GCGCGc -3' miRNA: 3'- cUGgaCCCGCCCguCGUgCaUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 118366 | 0.67 | 0.643951 |
Target: 5'- cGGCCgggcgcugGGGCGcGCGGCccgaggcgcugGCGgcCGCGGg -3' miRNA: 3'- -CUGGa-------CCCGCcCGUCG-----------UGCauGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 54121 | 0.67 | 0.643951 |
Target: 5'- cGACCgcGGGCucgucccacGGcacgccgcacGCGGC-CGUGCGCGGg -3' miRNA: 3'- -CUGGa-CCCG---------CC----------CGUCGuGCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 23466 | 0.67 | 0.643951 |
Target: 5'- cGCCaGGccCGcGGCGGCGaGUGCGCGGg -3' miRNA: 3'- cUGGaCCc-GC-CCGUCGUgCAUGCGCC- -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 137761 | 0.67 | 0.643951 |
Target: 5'- cGCggGGGCGGGguGCGgG-GCGCGc -3' miRNA: 3'- cUGgaCCCGCCCguCGUgCaUGCGCc -5' |
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23764 | 3' | -61 | NC_005261.1 | + | 96135 | 0.67 | 0.634032 |
Target: 5'- cGACCUGcGGC-GGCGGCAcgagaaggccguCGUGcCGCGc -3' miRNA: 3'- -CUGGAC-CCGcCCGUCGU------------GCAU-GCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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