miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 96135 0.67 0.634032
Target:  5'- cGACCUGcGGC-GGCGGCAcgagaaggccguCGUGcCGCGc -3'
miRNA:   3'- -CUGGAC-CCGcCCGUCGU------------GCAU-GCGCc -5'
23764 3' -61 NC_005261.1 + 118925 0.67 0.634032
Target:  5'- cGCCgcGGGCGcGGCGccGCGCGgcuggcCGCGGc -3'
miRNA:   3'- cUGGa-CCCGC-CCGU--CGUGCau----GCGCC- -5'
23764 3' -61 NC_005261.1 + 76460 0.67 0.634032
Target:  5'- cGGCgacGGCGGcGcCGGCGCGcGCGCGGa -3'
miRNA:   3'- -CUGgacCCGCC-C-GUCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 1709 0.67 0.634032
Target:  5'- uGCC-GGuacucGCGcGGCGGCACGggcaccgcggUGCGCGGg -3'
miRNA:   3'- cUGGaCC-----CGC-CCGUCGUGC----------AUGCGCC- -5'
23764 3' -61 NC_005261.1 + 125804 0.67 0.634032
Target:  5'- gGGCUUGGGCcgGGGCcGCcGCGaGCGgGGc -3'
miRNA:   3'- -CUGGACCCG--CCCGuCG-UGCaUGCgCC- -5'
23764 3' -61 NC_005261.1 + 102852 0.67 0.634032
Target:  5'- cGugCUGGGCcaGCAGCGCGUccaggaaggcgaACucggGCGGg -3'
miRNA:   3'- -CugGACCCGccCGUCGUGCA------------UG----CGCC- -5'
23764 3' -61 NC_005261.1 + 137048 0.67 0.63304
Target:  5'- ----aGGGCGgaccgucGGCAgGCGCGgagGCGCGGg -3'
miRNA:   3'- cuggaCCCGC-------CCGU-CGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 117995 0.67 0.62808
Target:  5'- cGGCCUGacGGC-GGCGGCgcuggacgcugucggACGcACGCGGg -3'
miRNA:   3'- -CUGGAC--CCGcCCGUCG---------------UGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 122619 0.67 0.624111
Target:  5'- uGCCUGugcuugaacGGCGagcgcgaggcccGGC-GCGCGUACGUGGg -3'
miRNA:   3'- cUGGAC---------CCGC------------CCGuCGUGCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 73216 0.67 0.624111
Target:  5'- cGCCUcgagGGGCGcGGUGGcCGCGaGCGCGa -3'
miRNA:   3'- cUGGA----CCCGC-CCGUC-GUGCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 74686 0.67 0.624111
Target:  5'- cGACCgcgcgGGaGCuGGCcgccGCGCGgGCGCGGa -3'
miRNA:   3'- -CUGGa----CC-CGcCCGu---CGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 12321 0.67 0.624111
Target:  5'- aGCC--GGCGGGC-GCGCGcuuggccgGCGCGGc -3'
miRNA:   3'- cUGGacCCGCCCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 135006 0.67 0.624111
Target:  5'- -cCCUGgcgcGGCGGGCccGCACGcggcCGCGGc -3'
miRNA:   3'- cuGGAC----CCGCCCGu-CGUGCau--GCGCC- -5'
23764 3' -61 NC_005261.1 + 68271 0.67 0.624111
Target:  5'- cGCCUGcgcccgcgcGGCGGGgcccCGGcCGCGgGCGCGGa -3'
miRNA:   3'- cUGGAC---------CCGCCC----GUC-GUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 123190 0.67 0.624111
Target:  5'- --gCUGGuGUGGGCGGacccagccgcCGCGUaaGCGCGGc -3'
miRNA:   3'- cugGACC-CGCCCGUC----------GUGCA--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 98493 0.67 0.624111
Target:  5'- gGGCUcGGGCGGGUAaggugccggcGUACGggcagGCGCGa -3'
miRNA:   3'- -CUGGaCCCGCCCGU----------CGUGCa----UGCGCc -5'
23764 3' -61 NC_005261.1 + 98046 0.67 0.614197
Target:  5'- --aCUGGcggccGCGGGCGGCGgGacCGCGGg -3'
miRNA:   3'- cugGACC-----CGCCCGUCGUgCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 29950 0.67 0.614197
Target:  5'- cGGCCUGccgcgaGGCGcuagaGGCGGCGCgGUGCGCc- -3'
miRNA:   3'- -CUGGAC------CCGC-----CCGUCGUG-CAUGCGcc -5'
23764 3' -61 NC_005261.1 + 27246 0.67 0.614197
Target:  5'- cGCCUGGGgugGGGCGGggUGUGCG-GGc -3'
miRNA:   3'- cUGGACCCg--CCCGUCguGCAUGCgCC- -5'
23764 3' -61 NC_005261.1 + 90883 0.67 0.614197
Target:  5'- cGCgCUGGGCGa-CGGCAUG-GCGCGGc -3'
miRNA:   3'- cUG-GACCCGCccGUCGUGCaUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.