miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 78 0.67 0.643951
Target:  5'- cGCggGGGCGGGguGCGgG-GCGCGc -3'
miRNA:   3'- cUGgaCCCGCCCguCGUgCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 148 0.66 0.693262
Target:  5'- gGGCUggcaGGGCuGGCGGa--GUugGCGGg -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCgugCAugCGCC- -5'
23764 3' -61 NC_005261.1 + 1001 0.69 0.526297
Target:  5'- aGACggGGGCGGGgGGCGgGgg-GCGGg -3'
miRNA:   3'- -CUGgaCCCGCCCgUCGUgCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 1029 0.71 0.409163
Target:  5'- gGGCUUuugcggaggGcGGCGGGCGGCGgCGUuagcgGCGCGGg -3'
miRNA:   3'- -CUGGA---------C-CCGCCCGUCGU-GCA-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 1186 0.76 0.194347
Target:  5'- cGGCCgGGGCcgGGGCcgGGCGCG-GCGCGGa -3'
miRNA:   3'- -CUGGaCCCG--CCCG--UCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 1709 0.67 0.634032
Target:  5'- uGCC-GGuacucGCGcGGCGGCACGggcaccgcggUGCGCGGg -3'
miRNA:   3'- cUGGaCC-----CGC-CCGUCGUGC----------AUGCGCC- -5'
23764 3' -61 NC_005261.1 + 1929 0.66 0.653862
Target:  5'- cGCaCUGcgccGCGGGCAGCACcgcgGCGCGc -3'
miRNA:   3'- cUG-GACc---CGCCCGUCGUGca--UGCGCc -5'
23764 3' -61 NC_005261.1 + 2522 0.68 0.55229
Target:  5'- cGACCUcgGGGC-GGCAGUaggccgccagcgccGCGgcgcuggGCGCGGg -3'
miRNA:   3'- -CUGGA--CCCGcCCGUCG--------------UGCa------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 2638 0.69 0.507343
Target:  5'- gGGCCcagcacgcGGGCGGGCAGCGgCGgcucccgccGCGCuGGg -3'
miRNA:   3'- -CUGGa-------CCCGCCCGUCGU-GCa--------UGCG-CC- -5'
23764 3' -61 NC_005261.1 + 3539 0.76 0.208886
Target:  5'- cGCCUcGGCGcGCAGCGCGgcggGCGCGGc -3'
miRNA:   3'- cUGGAcCCGCcCGUCGUGCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 3833 0.69 0.516785
Target:  5'- gGGCCcGGGCGcuGGCGGCAgCGgcgccggcgccGCGCGGc -3'
miRNA:   3'- -CUGGaCCCGC--CCGUCGU-GCa----------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 3931 0.72 0.330904
Target:  5'- cGGCCUccGGGUaGGCcaugGGCGCGUACGCGc -3'
miRNA:   3'- -CUGGA--CCCGcCCG----UCGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 4397 0.72 0.353181
Target:  5'- cGGCC-GGGCGgcGGCGGCGCGcUGC-CGGg -3'
miRNA:   3'- -CUGGaCCCGC--CCGUCGUGC-AUGcGCC- -5'
23764 3' -61 NC_005261.1 + 4497 0.71 0.384498
Target:  5'- aGCCUGcGCGGGCcccagucGCGCGcccGCGCGGg -3'
miRNA:   3'- cUGGACcCGCCCGu------CGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 5492 0.68 0.555203
Target:  5'- cGCC-GGG-GGGUAGCugGggcCGCGGc -3'
miRNA:   3'- cUGGaCCCgCCCGUCGugCau-GCGCC- -5'
23764 3' -61 NC_005261.1 + 5730 0.67 0.604295
Target:  5'- aGGCC--GGCGGGagaAGCGC--GCGCGGa -3'
miRNA:   3'- -CUGGacCCGCCCg--UCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 7195 0.76 0.194347
Target:  5'- ----aGGGgGGGguGCGCGUGCGUGGc -3'
miRNA:   3'- cuggaCCCgCCCguCGUGCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 9163 0.71 0.376498
Target:  5'- gGACCUGGcGCcgcccGGCcaGGUACGUGgGCGGg -3'
miRNA:   3'- -CUGGACC-CGc----CCG--UCGUGCAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 9613 0.7 0.469448
Target:  5'- gGGCCcgGGGUGGGCaggcgggggugggGGCugGgUGgGCGGg -3'
miRNA:   3'- -CUGGa-CCCGCCCG-------------UCGugC-AUgCGCC- -5'
23764 3' -61 NC_005261.1 + 10018 0.73 0.302838
Target:  5'- cGACC-GGGCGGGCcuCGCGU-CGgGGg -3'
miRNA:   3'- -CUGGaCCCGCCCGucGUGCAuGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.