miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 12321 0.67 0.624111
Target:  5'- aGCC--GGCGGGC-GCGCGcuuggccgGCGCGGc -3'
miRNA:   3'- cUGGacCCGCCCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 12744 0.78 0.152123
Target:  5'- -cCCUGGGCGGGCccGGCGagguCGUAgGCGGc -3'
miRNA:   3'- cuGGACCCGCCCG--UCGU----GCAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 13084 0.66 0.657821
Target:  5'- cGGCCcgucGGCGGGCGGCgggcucggcucggggGCGUcggcggcCGCGGg -3'
miRNA:   3'- -CUGGac--CCGCCCGUCG---------------UGCAu------GCGCC- -5'
23764 3' -61 NC_005261.1 + 13667 0.72 0.323712
Target:  5'- cGCCgcgGGGgGGGCgcggGGCGCGcggGCGUGGg -3'
miRNA:   3'- cUGGa--CCCgCCCG----UCGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 15433 0.71 0.398354
Target:  5'- cGGCCgGGcGCGGGCcggcgauggagaagAGCACGUGguucucgacCGCGGc -3'
miRNA:   3'- -CUGGaCC-CGCCCG--------------UCGUGCAU---------GCGCC- -5'
23764 3' -61 NC_005261.1 + 15780 0.69 0.479477
Target:  5'- aGGCCgcuGGCGGGCGcCGCccGCGCGGc -3'
miRNA:   3'- -CUGGac-CCGCCCGUcGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 16049 0.66 0.703013
Target:  5'- -uCUUGGGCagcGGGCccgcgccgagccGGCGCGUguagacgaaguACGCGGc -3'
miRNA:   3'- cuGGACCCG---CCCG------------UCGUGCA-----------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 16157 0.71 0.400832
Target:  5'- cGACC--GGCaGGGCAGUAgGggGCGCGGg -3'
miRNA:   3'- -CUGGacCCG-CCCGUCGUgCa-UGCGCC- -5'
23764 3' -61 NC_005261.1 + 19497 0.66 0.673625
Target:  5'- cGAUCc-GGCGGGaguGCAgGUACGCGa -3'
miRNA:   3'- -CUGGacCCGCCCgu-CGUgCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 19946 0.7 0.469448
Target:  5'- -uCCUGGGCgggggugGGGCGGCcuCGgcUGCGGc -3'
miRNA:   3'- cuGGACCCG-------CCCGUCGu-GCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 20554 0.68 0.555203
Target:  5'- gGACgUGgcGGCGGGCugcgcagcGGCGcCGgcgGCGCGGg -3'
miRNA:   3'- -CUGgAC--CCGCCCG--------UCGU-GCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 21819 0.77 0.172082
Target:  5'- gGGCCcGcGGCGGGC-GCGCGUGCggGCGGg -3'
miRNA:   3'- -CUGGaC-CCGCCCGuCGUGCAUG--CGCC- -5'
23764 3' -61 NC_005261.1 + 22091 0.66 0.653862
Target:  5'- cGCCgcguggGGGCGGGagGGCG-GUGUGCGGa -3'
miRNA:   3'- cUGGa-----CCCGCCCg-UCGUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 23466 0.67 0.643951
Target:  5'- cGCCaGGccCGcGGCGGCGaGUGCGCGGg -3'
miRNA:   3'- cUGGaCCc-GC-CCGUCGUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 23497 0.68 0.545511
Target:  5'- cGCCUGGGCaGGcGCGGgccCugGgagcACGCGGu -3'
miRNA:   3'- cUGGACCCG-CC-CGUC---GugCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 23805 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 23862 0.66 0.683464
Target:  5'- aGGCCggcugGGGCGGGCuuGCccCGg--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGu-CGu-GCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 23938 0.66 0.673625
Target:  5'- cACCUcGcGGCGGGUucgGGguCGUcggcACGCGGu -3'
miRNA:   3'- cUGGA-C-CCGCCCG---UCguGCA----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 24136 0.68 0.574731
Target:  5'- gGGgCUGGGUGGGCGGgGCucACcugGCGGg -3'
miRNA:   3'- -CUgGACCCGCCCGUCgUGcaUG---CGCC- -5'
23764 3' -61 NC_005261.1 + 26247 0.67 0.614197
Target:  5'- aGACCgcggauggGGGgGGGCGGCAacaaugGCGGa -3'
miRNA:   3'- -CUGGa-------CCCgCCCGUCGUgcaug-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.