miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 27246 0.67 0.614197
Target:  5'- cGCCUGGGgugGGGCGGggUGUGCG-GGc -3'
miRNA:   3'- cUGGACCCg--CCCGUCguGCAUGCgCC- -5'
23764 3' -61 NC_005261.1 + 27377 0.74 0.246478
Target:  5'- aGGCC--GGUGGGCAGgGgGUACGCGGc -3'
miRNA:   3'- -CUGGacCCGCCCGUCgUgCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 27512 0.72 0.326575
Target:  5'- -gUCUGGGCGGGcCAGCugGgcccgcccucgcaccUAgGCGGg -3'
miRNA:   3'- cuGGACCCGCCC-GUCGugC---------------AUgCGCC- -5'
23764 3' -61 NC_005261.1 + 28774 0.73 0.309679
Target:  5'- cGCCUGGGCc-GCGGCGCGggcgcuCGCGGc -3'
miRNA:   3'- cUGGACCCGccCGUCGUGCau----GCGCC- -5'
23764 3' -61 NC_005261.1 + 29175 0.66 0.673625
Target:  5'- aGGCCaGGGCccGGcgcccucgccGCGGCGCccGCGCGGg -3'
miRNA:   3'- -CUGGaCCCG--CC----------CGUCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 29894 0.69 0.497975
Target:  5'- cGCCcGGGCccgcGGCAGCGCGcgaGCGGc -3'
miRNA:   3'- cUGGaCCCGc---CCGUCGUGCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 29950 0.67 0.614197
Target:  5'- cGGCCUGccgcgaGGCGcuagaGGCGGCGCgGUGCGCc- -3'
miRNA:   3'- -CUGGAC------CCGC-----CCGUCGUG-CAUGCGcc -5'
23764 3' -61 NC_005261.1 + 31558 0.7 0.461322
Target:  5'- cGCCUGGGcCGGGUccuggacgGGCGCGccggACGUGa -3'
miRNA:   3'- cUGGACCC-GCCCG--------UCGUGCa---UGCGCc -5'
23764 3' -61 NC_005261.1 + 31670 0.66 0.653862
Target:  5'- uGCCUGcGGCuGGccGCGGCGCGgcgGCGGc -3'
miRNA:   3'- cUGGAC-CCG-CC--CGUCGUGCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 31749 0.69 0.488685
Target:  5'- cGGCCgucGGGCaGGC-GCACGUGuaccugcgcgcCGCGGu -3'
miRNA:   3'- -CUGGa--CCCGcCCGuCGUGCAU-----------GCGCC- -5'
23764 3' -61 NC_005261.1 + 31817 0.67 0.643951
Target:  5'- uGGCCUGaGCGGcGCGcGCugGcGCGCGc -3'
miRNA:   3'- -CUGGACcCGCC-CGU-CGugCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 32176 0.74 0.27664
Target:  5'- uACCUGGccuGCGGGCGGCGC--GCGCuGGa -3'
miRNA:   3'- cUGGACC---CGCCCGUCGUGcaUGCG-CC- -5'
23764 3' -61 NC_005261.1 + 32355 0.66 0.670667
Target:  5'- gGACCaGGGCccgcgggagacgcuGGuGCAgGCGCG-GCGCGGc -3'
miRNA:   3'- -CUGGaCCCG--------------CC-CGU-CGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 32441 0.7 0.460424
Target:  5'- cGGCCUGGGCGccGGCacagucacccccgGGCACGgACuCGGg -3'
miRNA:   3'- -CUGGACCCGC--CCG-------------UCGUGCaUGcGCC- -5'
23764 3' -61 NC_005261.1 + 32545 0.68 0.535874
Target:  5'- cGGCCgcGGcGCGGGcCGGCGC--GCGUGGa -3'
miRNA:   3'- -CUGGa-CC-CGCCC-GUCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 32918 0.66 0.703013
Target:  5'- cGCgUGGG-GGGCGGCggGCGggggggGgGCGGg -3'
miRNA:   3'- cUGgACCCgCCCGUCG--UGCa-----UgCGCC- -5'
23764 3' -61 NC_005261.1 + 33595 0.71 0.400832
Target:  5'- cACCagGGGCGGcGcCGGCGCGgGCgGCGGg -3'
miRNA:   3'- cUGGa-CCCGCC-C-GUCGUGCaUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 33826 0.68 0.555203
Target:  5'- cGGCCggggGGcGCGGGCccccuGGCGC-UGgGCGGg -3'
miRNA:   3'- -CUGGa---CC-CGCCCG-----UCGUGcAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 34198 0.66 0.663755
Target:  5'- gGGCCgGaGGCaGaCGGCGCGUcggACGCGGa -3'
miRNA:   3'- -CUGGaC-CCGcCcGUCGUGCA---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 34352 0.71 0.368612
Target:  5'- cGGCCgacgGGGcCGGGCGccgcgcggcgccGCGCGcagACGCGGc -3'
miRNA:   3'- -CUGGa---CCC-GCCCGU------------CGUGCa--UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.