miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 137831 0.66 0.693262
Target:  5'- gGGCUggcaGGGCuGGCGGa--GUugGCGGg -3'
miRNA:   3'- -CUGGa---CCCGcCCGUCgugCAugCGCC- -5'
23764 3' -61 NC_005261.1 + 137761 0.67 0.643951
Target:  5'- cGCggGGGCGGGguGCGgG-GCGCGc -3'
miRNA:   3'- cUGgaCCCGCCCguCGUgCaUGCGCc -5'
23764 3' -61 NC_005261.1 + 137048 0.67 0.63304
Target:  5'- ----aGGGCGgaccgucGGCAgGCGCGgagGCGCGGg -3'
miRNA:   3'- cuggaCCCGC-------CCGU-CGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 136905 0.74 0.258203
Target:  5'- uGGCgUGGuGUGGGCcGCGCGgcCGCGGc -3'
miRNA:   3'- -CUGgACC-CGCCCGuCGUGCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 136858 0.69 0.497975
Target:  5'- aACUUGcGGCaGGGCAGgAUGgcguagGCGCGGc -3'
miRNA:   3'- cUGGAC-CCG-CCCGUCgUGCa-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 135006 0.67 0.624111
Target:  5'- -cCCUGgcgcGGCGGGCccGCACGcggcCGCGGc -3'
miRNA:   3'- cuGGAC----CCGCCCGu-CGUGCau--GCGCC- -5'
23764 3' -61 NC_005261.1 + 134467 0.68 0.574731
Target:  5'- uACCUGGccgccaucGUGGGCGGCGuCGU-CGCGc -3'
miRNA:   3'- cUGGACC--------CGCCCGUCGU-GCAuGCGCc -5'
23764 3' -61 NC_005261.1 + 134193 0.72 0.345639
Target:  5'- gGGCCUGGcGCGGcuCGGCGCGcggguCGCGGc -3'
miRNA:   3'- -CUGGACC-CGCCc-GUCGUGCau---GCGCC- -5'
23764 3' -61 NC_005261.1 + 132896 0.66 0.663755
Target:  5'- aGCCgGGcgccGCGGGCGGCGcCGaGCgGCGGc -3'
miRNA:   3'- cUGGaCC----CGCCCGUCGU-GCaUG-CGCC- -5'
23764 3' -61 NC_005261.1 + 131596 0.66 0.703013
Target:  5'- aGGCCUacGCGcGcGCGcGCACGUACGCGc -3'
miRNA:   3'- -CUGGAccCGC-C-CGU-CGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 128101 0.71 0.39261
Target:  5'- ----cGGGCGaGCGGCGCG-GCGCGGg -3'
miRNA:   3'- cuggaCCCGCcCGUCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 128064 0.68 0.555203
Target:  5'- gGGCCauggcGGGCGGGCGGgcgaGCGa--GCGGg -3'
miRNA:   3'- -CUGGa----CCCGCCCGUCg---UGCaugCGCC- -5'
23764 3' -61 NC_005261.1 + 127909 0.7 0.443537
Target:  5'- gGGCCUGGGCuuGGGCucgGGCcCGcucgAUGCGGc -3'
miRNA:   3'- -CUGGACCCG--CCCG---UCGuGCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 126943 0.76 0.20739
Target:  5'- cGGCCagGGGCGccgggcgcgggggcGGCAGCGCGaaccGCGCGGg -3'
miRNA:   3'- -CUGGa-CCCGC--------------CCGUCGUGCa---UGCGCC- -5'
23764 3' -61 NC_005261.1 + 126695 0.66 0.653862
Target:  5'- aGGCCggcGGuGCGGGaAGCggcugguucGCGUGCGCGu -3'
miRNA:   3'- -CUGGa--CC-CGCCCgUCG---------UGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 126080 0.71 0.368612
Target:  5'- cGGCCUcGGCGGGCGcgcccaucuucGCGCGUACuuGGu -3'
miRNA:   3'- -CUGGAcCCGCCCGU-----------CGUGCAUGcgCC- -5'
23764 3' -61 NC_005261.1 + 125804 0.67 0.634032
Target:  5'- gGGCUUGGGCcgGGGCcGCcGCGaGCGgGGc -3'
miRNA:   3'- -CUGGACCCG--CCCGuCG-UGCaUGCgCC- -5'
23764 3' -61 NC_005261.1 + 124695 0.7 0.470355
Target:  5'- uACCUGaGGCuGGGCAgGgGCGUACGUa- -3'
miRNA:   3'- cUGGAC-CCG-CCCGU-CgUGCAUGCGcc -5'
23764 3' -61 NC_005261.1 + 123902 0.68 0.584555
Target:  5'- aGGCCgccgcugugGGGUGcGGCccgAGCAgGUGCGCGc -3'
miRNA:   3'- -CUGGa--------CCCGC-CCG---UCGUgCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 123414 0.66 0.653862
Target:  5'- cGGCCagGGGCGGGCucGCcACGggcCGCa- -3'
miRNA:   3'- -CUGGa-CCCGCCCGu-CG-UGCau-GCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.