miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 123190 0.67 0.624111
Target:  5'- --gCUGGuGUGGGCGGacccagccgcCGCGUaaGCGCGGc -3'
miRNA:   3'- cugGACC-CGCCCGUC----------GUGCA--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 123163 0.74 0.258203
Target:  5'- gGGCg-GGGCGGGC-GCGCGgGCGUGGu -3'
miRNA:   3'- -CUGgaCCCGCCCGuCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 122619 0.67 0.624111
Target:  5'- uGCCUGugcuugaacGGCGagcgcgaggcccGGC-GCGCGUACGUGGg -3'
miRNA:   3'- cUGGAC---------CCGC------------CCGuCGUGCAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 121796 0.71 0.384498
Target:  5'- cGGgCUGGGCaGGgGGCGCGUGgcugggcucUGCGGg -3'
miRNA:   3'- -CUgGACCCGcCCgUCGUGCAU---------GCGCC- -5'
23764 3' -61 NC_005261.1 + 121105 0.7 0.433921
Target:  5'- aGGCCgu-GCGGGUccucuagGGCGCGgagGCGCGGg -3'
miRNA:   3'- -CUGGaccCGCCCG-------UCGUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 120423 0.68 0.564945
Target:  5'- cGGCCUGGGCuGGUga-ACaUGCGCGGc -3'
miRNA:   3'- -CUGGACCCGcCCGucgUGcAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 118925 0.67 0.634032
Target:  5'- cGCCgcGGGCGcGGCGccGCGCGgcuggcCGCGGc -3'
miRNA:   3'- cUGGa-CCCGC-CCGU--CGUGCau----GCGCC- -5'
23764 3' -61 NC_005261.1 + 118824 0.7 0.443537
Target:  5'- -cCCUGGGCGcGGCAcuGCcgcucuGCG-GCGCGGa -3'
miRNA:   3'- cuGGACCCGC-CCGU--CG------UGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 118672 0.68 0.555203
Target:  5'- gGGCUgaggGcGGCGGGCgcuGGCGCacGCGCGGc -3'
miRNA:   3'- -CUGGa---C-CCGCCCG---UCGUGcaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 118366 0.67 0.643951
Target:  5'- cGGCCgggcgcugGGGCGcGCGGCccgaggcgcugGCGgcCGCGGg -3'
miRNA:   3'- -CUGGa-------CCCGCcCGUCG-----------UGCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 117995 0.67 0.62808
Target:  5'- cGGCCUGacGGC-GGCGGCgcuggacgcugucggACGcACGCGGg -3'
miRNA:   3'- -CUGGAC--CCGcCCGUCG---------------UGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 117314 0.66 0.683464
Target:  5'- aGCCccGGcGCGGGCAGCAa--GCGCa- -3'
miRNA:   3'- cUGGa-CC-CGCCCGUCGUgcaUGCGcc -5'
23764 3' -61 NC_005261.1 + 116476 0.74 0.264235
Target:  5'- uGCC-GGcGCGGGCGGgGCGggcGCGCGGu -3'
miRNA:   3'- cUGGaCC-CGCCCGUCgUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 115410 0.68 0.555203
Target:  5'- cGACCgcGGGC-GGCAGC-CGgggcCGCGGc -3'
miRNA:   3'- -CUGGa-CCCGcCCGUCGuGCau--GCGCC- -5'
23764 3' -61 NC_005261.1 + 113886 0.66 0.653862
Target:  5'- cACCUGuagcggcgacgcGGCGGGCgcgauggccgaGGCAgCGgGCGCGGc -3'
miRNA:   3'- cUGGAC------------CCGCCCG-----------UCGU-GCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 113312 0.73 0.296114
Target:  5'- gGGCCUGGGCccGGCuGCGCGagaaggucGCGCGGc -3'
miRNA:   3'- -CUGGACCCGc-CCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 113009 0.75 0.221184
Target:  5'- uGAUgCUGGGCGGGCAGUAccccacagagcgggcCGcGCGCGGc -3'
miRNA:   3'- -CUG-GACCCGCCCGUCGU---------------GCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 112059 0.66 0.663755
Target:  5'- cGGCCUucGGGCGugcccucgucGGCgagGGCGCcacgugGUGCGCGGu -3'
miRNA:   3'- -CUGGA--CCCGC----------CCG---UCGUG------CAUGCGCC- -5'
23764 3' -61 NC_005261.1 + 111835 0.67 0.634032
Target:  5'- -cCCUGaGGuCGcGG-AGCGCGUGCGCGc -3'
miRNA:   3'- cuGGAC-CC-GC-CCgUCGUGCAUGCGCc -5'
23764 3' -61 NC_005261.1 + 110466 0.77 0.176345
Target:  5'- uGCCUGGGCGGGCuGCucuCGUggaccACGCaGGa -3'
miRNA:   3'- cUGGACCCGCCCGuCGu--GCA-----UGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.