miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 3' -61 NC_005261.1 + 21819 0.77 0.172082
Target:  5'- gGGCCcGcGGCGGGC-GCGCGUGCggGCGGg -3'
miRNA:   3'- -CUGGaC-CCGCCCGuCGUGCAUG--CGCC- -5'
23764 3' -61 NC_005261.1 + 90434 0.77 0.167912
Target:  5'- cGACgUGGGCGGGCGcGCGCugcacuuuGUGCGCGc -3'
miRNA:   3'- -CUGgACCCGCCCGU-CGUG--------CAUGCGCc -5'
23764 3' -61 NC_005261.1 + 94872 0.77 0.159842
Target:  5'- cGGCCcGGGCGGGCGGCccGCGUGCaGCc- -3'
miRNA:   3'- -CUGGaCCCGCCCGUCG--UGCAUG-CGcc -5'
23764 3' -61 NC_005261.1 + 12744 0.78 0.152123
Target:  5'- -cCCUGGGCGGGCccGGCGagguCGUAgGCGGc -3'
miRNA:   3'- cuGGACCCGCCCG--UCGU----GCAUgCGCC- -5'
23764 3' -61 NC_005261.1 + 74748 0.79 0.13096
Target:  5'- aACCUGcuGGCGcGGCAGCGCGccacagGCGCGGa -3'
miRNA:   3'- cUGGAC--CCGC-CCGUCGUGCa-----UGCGCC- -5'
23764 3' -61 NC_005261.1 + 74843 0.75 0.213936
Target:  5'- gGACCUGGG-GaGGCGGCGCGccGgGCGGa -3'
miRNA:   3'- -CUGGACCCgC-CCGUCGUGCa-UgCGCC- -5'
23764 3' -61 NC_005261.1 + 113009 0.75 0.221184
Target:  5'- uGAUgCUGGGCGGGCAGUAccccacagagcgggcCGcGCGCGGc -3'
miRNA:   3'- -CUG-GACCCGCCCGUCGU---------------GCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 10018 0.73 0.302838
Target:  5'- cGACC-GGGCGGGCcuCGCGU-CGgGGg -3'
miRNA:   3'- -CUGGaCCCGCCCGucGUGCAuGCgCC- -5'
23764 3' -61 NC_005261.1 + 37179 0.73 0.302838
Target:  5'- cGCCUGGGCGcugcuGGCGGCGC-UGCugGCGGc -3'
miRNA:   3'- cUGGACCCGC-----CCGUCGUGcAUG--CGCC- -5'
23764 3' -61 NC_005261.1 + 113312 0.73 0.296114
Target:  5'- gGGCCUGGGCccGGCuGCGCGagaaggucGCGCGGc -3'
miRNA:   3'- -CUGGACCCGc-CCGuCGUGCa-------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 97723 0.74 0.27664
Target:  5'- uGGCCcGGGCGGGCuaacGGCugGcagGgGCGGg -3'
miRNA:   3'- -CUGGaCCCGCCCG----UCGugCa--UgCGCC- -5'
23764 3' -61 NC_005261.1 + 69526 0.74 0.27664
Target:  5'- gGAgCUGGcGCGGGCgcuGGCGCGcGCGCuGGg -3'
miRNA:   3'- -CUgGACC-CGCCCG---UCGUGCaUGCG-CC- -5'
23764 3' -61 NC_005261.1 + 32176 0.74 0.27664
Target:  5'- uACCUGGccuGCGGGCGGCGC--GCGCuGGa -3'
miRNA:   3'- cUGGACC---CGCCCGUCGUGcaUGCG-CC- -5'
23764 3' -61 NC_005261.1 + 38942 0.74 0.264235
Target:  5'- cGGCC-GGGCGGGCcGCG-GcGCGCGGg -3'
miRNA:   3'- -CUGGaCCCGCCCGuCGUgCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 116476 0.74 0.264235
Target:  5'- uGCC-GGcGCGGGCGGgGCGggcGCGCGGu -3'
miRNA:   3'- cUGGaCC-CGCCCGUCgUGCa--UGCGCC- -5'
23764 3' -61 NC_005261.1 + 98303 0.74 0.260602
Target:  5'- cGGCCUcggGGGCGGGCgccgccgccagcggcGGCGCGccccgugucgACGCGGg -3'
miRNA:   3'- -CUGGA---CCCGCCCG---------------UCGUGCa---------UGCGCC- -5'
23764 3' -61 NC_005261.1 + 136905 0.74 0.258203
Target:  5'- uGGCgUGGuGUGGGCcGCGCGgcCGCGGc -3'
miRNA:   3'- -CUGgACC-CGCCCGuCGUGCauGCGCC- -5'
23764 3' -61 NC_005261.1 + 123163 0.74 0.258203
Target:  5'- gGGCg-GGGCGGGC-GCGCGgGCGUGGu -3'
miRNA:   3'- -CUGgaCCCGCCCGuCGUGCaUGCGCC- -5'
23764 3' -61 NC_005261.1 + 106859 0.74 0.252284
Target:  5'- cGCCUGGG-GGGCGG-GCGUcCGCGGc -3'
miRNA:   3'- cUGGACCCgCCCGUCgUGCAuGCGCC- -5'
23764 3' -61 NC_005261.1 + 27377 0.74 0.246478
Target:  5'- aGGCC--GGUGGGCAGgGgGUACGCGGc -3'
miRNA:   3'- -CUGGacCCGCCCGUCgUgCAUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.