miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 129724 0.66 0.7707
Target:  5'- cGCCGGcUGCAgcggcaGGGCgGCGggGCCCGg -3'
miRNA:   3'- uUGGUC-AUGUg-----CCUGgCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 1915 0.66 0.7707
Target:  5'- aGGCCAGcGCGCGGcgcacugcGCCGCGggcaGCaCCGc -3'
miRNA:   3'- -UUGGUCaUGUGCC--------UGGCGCa---CG-GGCa -5'
23764 5' -59 NC_005261.1 + 93467 0.66 0.7707
Target:  5'- cAGCgCGGUGC-CgGGGCgCGCGUcGCCCGc -3'
miRNA:   3'- -UUG-GUCAUGuG-CCUG-GCGCA-CGGGCa -5'
23764 5' -59 NC_005261.1 + 80656 0.66 0.7707
Target:  5'- uAGCUGGUGugcuCGCGGugCGCGccgucgcggaGCCCGUa -3'
miRNA:   3'- -UUGGUCAU----GUGCCugGCGCa---------CGGGCA- -5'
23764 5' -59 NC_005261.1 + 117910 0.66 0.7707
Target:  5'- uGAgCGGcUGCGCGGgaacgaaggccgGCUGCG-GCCCGUg -3'
miRNA:   3'- -UUgGUC-AUGUGCC------------UGGCGCaCGGGCA- -5'
23764 5' -59 NC_005261.1 + 80091 0.66 0.761324
Target:  5'- gGACCGGcGCGCGcGCCGCGguaccgGCuuGg -3'
miRNA:   3'- -UUGGUCaUGUGCcUGGCGCa-----CGggCa -5'
23764 5' -59 NC_005261.1 + 44897 0.66 0.761324
Target:  5'- uGGCCGgggcGUACACGGACCcacGCcggGCCCa- -3'
miRNA:   3'- -UUGGU----CAUGUGCCUGG---CGca-CGGGca -5'
23764 5' -59 NC_005261.1 + 123245 0.66 0.761324
Target:  5'- -cCCAG-GCGCGGGCCcCGcccaucGCCCGUg -3'
miRNA:   3'- uuGGUCaUGUGCCUGGcGCa-----CGGGCA- -5'
23764 5' -59 NC_005261.1 + 30079 0.66 0.761324
Target:  5'- cGCUAGcgGCGCacccGGAgCGCGUGCuCCGg -3'
miRNA:   3'- uUGGUCa-UGUG----CCUgGCGCACG-GGCa -5'
23764 5' -59 NC_005261.1 + 115410 0.66 0.761324
Target:  5'- cGACCGcGggcgGCAgccgGGGCCGCG-GCCCGa -3'
miRNA:   3'- -UUGGU-Ca---UGUg---CCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 30247 0.66 0.755643
Target:  5'- uGGCgCGGUACucgacgcgcggcgcgGCGGcCCGCGcGCCCGc -3'
miRNA:   3'- -UUG-GUCAUG---------------UGCCuGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 33826 0.66 0.751834
Target:  5'- cGGCCGGgggGCGCGGGCCcccuggcgcuggGCGgGCCgGg -3'
miRNA:   3'- -UUGGUCa--UGUGCCUGG------------CGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 101957 0.66 0.751834
Target:  5'- gAGCCGGgGCACGG-CCGCcagGUcGCCCu- -3'
miRNA:   3'- -UUGGUCaUGUGCCuGGCG---CA-CGGGca -5'
23764 5' -59 NC_005261.1 + 116157 0.66 0.751834
Target:  5'- gAAgCAGcGCGCGGucgcgGCCGCGUcCCCGa -3'
miRNA:   3'- -UUgGUCaUGUGCC-----UGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 58489 0.66 0.751834
Target:  5'- aGGCCGGcGCGCGG-CCGCuuuuggcGCCCGc -3'
miRNA:   3'- -UUGGUCaUGUGCCuGGCGca-----CGGGCa -5'
23764 5' -59 NC_005261.1 + 117711 0.66 0.751834
Target:  5'- aGGCCGGcGCGCGGGCCcgcaaGCG-GCCgCGc -3'
miRNA:   3'- -UUGGUCaUGUGCCUGG-----CGCaCGG-GCa -5'
23764 5' -59 NC_005261.1 + 133647 0.66 0.742242
Target:  5'- cGCCGcUGCGCGaGcGCUGCGUGCUCGc -3'
miRNA:   3'- uUGGUcAUGUGC-C-UGGCGCACGGGCa -5'
23764 5' -59 NC_005261.1 + 40044 0.66 0.742242
Target:  5'- cGACCAGcgugGCgACGGGCC-CGUGCUgGa -3'
miRNA:   3'- -UUGGUCa---UG-UGCCUGGcGCACGGgCa -5'
23764 5' -59 NC_005261.1 + 99659 0.66 0.742242
Target:  5'- cGCCAGcACGCuGACCGuCGUcagcgcgcuGCCCGg -3'
miRNA:   3'- uUGGUCaUGUGcCUGGC-GCA---------CGGGCa -5'
23764 5' -59 NC_005261.1 + 114692 0.66 0.732554
Target:  5'- -uUgAGUacaGCGCGGACCGCuUGCUCGc -3'
miRNA:   3'- uuGgUCA---UGUGCCUGGCGcACGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.