Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23764 | 5' | -59 | NC_005261.1 | + | 133647 | 0.66 | 0.742242 |
Target: 5'- cGCCGcUGCGCGaGcGCUGCGUGCUCGc -3' miRNA: 3'- uUGGUcAUGUGC-C-UGGCGCACGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 116157 | 0.66 | 0.751834 |
Target: 5'- gAAgCAGcGCGCGGucgcgGCCGCGUcCCCGa -3' miRNA: 3'- -UUgGUCaUGUGCC-----UGGCGCAcGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 41064 | 0.66 | 0.722782 |
Target: 5'- gAGCCGGcgGCGCGGuccGCCGCcaGCCCc- -3' miRNA: 3'- -UUGGUCa-UGUGCC---UGGCGcaCGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 29493 | 0.66 | 0.732554 |
Target: 5'- gGACCugguGUACGCGcGCCGCGacgccaugGCCUGg -3' miRNA: 3'- -UUGGu---CAUGUGCcUGGCGCa-------CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 66739 | 0.66 | 0.731581 |
Target: 5'- cACCAuguaguuGUGCACGGGCUgguccaccggGUGUGgCCCGUc -3' miRNA: 3'- uUGGU-------CAUGUGCCUGG----------CGCAC-GGGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 134252 | 0.66 | 0.732554 |
Target: 5'- cGCCc-UGCGCGG-CCGCGUaCCCGa -3' miRNA: 3'- uUGGucAUGUGCCuGGCGCAcGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 38935 | 0.66 | 0.732554 |
Target: 5'- aAGCCGGcgGCcggGCGGGCCGCG-GCgCGc -3' miRNA: 3'- -UUGGUCa-UG---UGCCUGGCGCaCGgGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 40044 | 0.66 | 0.742242 |
Target: 5'- cGACCAGcgugGCgACGGGCC-CGUGCUgGa -3' miRNA: 3'- -UUGGUCa---UG-UGCCUGGcGCACGGgCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 33826 | 0.66 | 0.751834 |
Target: 5'- cGGCCGGgggGCGCGGGCCcccuggcgcuggGCGgGCCgGg -3' miRNA: 3'- -UUGGUCa--UGUGCCUGG------------CGCaCGGgCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 30247 | 0.66 | 0.755643 |
Target: 5'- uGGCgCGGUACucgacgcgcggcgcgGCGGcCCGCGcGCCCGc -3' miRNA: 3'- -UUG-GUCAUG---------------UGCCuGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 115410 | 0.66 | 0.761324 |
Target: 5'- cGACCGcGggcgGCAgccgGGGCCGCG-GCCCGa -3' miRNA: 3'- -UUGGU-Ca---UGUg---CCUGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 99659 | 0.66 | 0.742242 |
Target: 5'- cGCCAGcACGCuGACCGuCGUcagcgcgcuGCCCGg -3' miRNA: 3'- uUGGUCaUGUGcCUGGC-GCA---------CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 108302 | 0.66 | 0.729631 |
Target: 5'- cGCC--UGCACGGcgucccagacggccGCCGCGUGCuCCGc -3' miRNA: 3'- uUGGucAUGUGCC--------------UGGCGCACG-GGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 93467 | 0.66 | 0.7707 |
Target: 5'- cAGCgCGGUGC-CgGGGCgCGCGUcGCCCGc -3' miRNA: 3'- -UUG-GUCAUGuG-CCUG-GCGCA-CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 46423 | 0.66 | 0.731581 |
Target: 5'- gAGCCAGUACuuguugaccgaccACGaGACgGCGUGCgUGa -3' miRNA: 3'- -UUGGUCAUG-------------UGC-CUGgCGCACGgGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 101957 | 0.66 | 0.751834 |
Target: 5'- gAGCCGGgGCACGG-CCGCcagGUcGCCCu- -3' miRNA: 3'- -UUGGUCaUGUGCCuGGCG---CA-CGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 117711 | 0.66 | 0.751834 |
Target: 5'- aGGCCGGcGCGCGGGCCcgcaaGCG-GCCgCGc -3' miRNA: 3'- -UUGGUCaUGUGCCUGG-----CGCaCGG-GCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 118485 | 0.66 | 0.722782 |
Target: 5'- uGCCGGUAUGCGGcGCUGCGgacCCUGg -3' miRNA: 3'- uUGGUCAUGUGCC-UGGCGCac-GGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 58489 | 0.66 | 0.751834 |
Target: 5'- aGGCCGGcGCGCGG-CCGCuuuuggcGCCCGc -3' miRNA: 3'- -UUGGUCaUGUGCCuGGCGca-----CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 131921 | 0.66 | 0.732554 |
Target: 5'- gGGCUuuuuGgcgcGCGCGGgACCGCgGUGCCCGc -3' miRNA: 3'- -UUGGu---Ca---UGUGCC-UGGCG-CACGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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