miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 133647 0.66 0.742242
Target:  5'- cGCCGcUGCGCGaGcGCUGCGUGCUCGc -3'
miRNA:   3'- uUGGUcAUGUGC-C-UGGCGCACGGGCa -5'
23764 5' -59 NC_005261.1 + 108302 0.66 0.729631
Target:  5'- cGCC--UGCACGGcgucccagacggccGCCGCGUGCuCCGc -3'
miRNA:   3'- uUGGucAUGUGCC--------------UGGCGCACG-GGCa -5'
23764 5' -59 NC_005261.1 + 33826 0.66 0.751834
Target:  5'- cGGCCGGgggGCGCGGGCCcccuggcgcuggGCGgGCCgGg -3'
miRNA:   3'- -UUGGUCa--UGUGCCUGG------------CGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 29493 0.66 0.732554
Target:  5'- gGACCugguGUACGCGcGCCGCGacgccaugGCCUGg -3'
miRNA:   3'- -UUGGu---CAUGUGCcUGGCGCa-------CGGGCa -5'
23764 5' -59 NC_005261.1 + 101957 0.66 0.751834
Target:  5'- gAGCCGGgGCACGG-CCGCcagGUcGCCCu- -3'
miRNA:   3'- -UUGGUCaUGUGCCuGGCG---CA-CGGGca -5'
23764 5' -59 NC_005261.1 + 40044 0.66 0.742242
Target:  5'- cGACCAGcgugGCgACGGGCC-CGUGCUgGa -3'
miRNA:   3'- -UUGGUCa---UG-UGCCUGGcGCACGGgCa -5'
23764 5' -59 NC_005261.1 + 118485 0.66 0.722782
Target:  5'- uGCCGGUAUGCGGcGCUGCGgacCCUGg -3'
miRNA:   3'- uUGGUCAUGUGCC-UGGCGCac-GGGCa -5'
23764 5' -59 NC_005261.1 + 80091 0.66 0.761324
Target:  5'- gGACCGGcGCGCGcGCCGCGguaccgGCuuGg -3'
miRNA:   3'- -UUGGUCaUGUGCcUGGCGCa-----CGggCa -5'
23764 5' -59 NC_005261.1 + 93467 0.66 0.7707
Target:  5'- cAGCgCGGUGC-CgGGGCgCGCGUcGCCCGc -3'
miRNA:   3'- -UUG-GUCAUGuG-CCUG-GCGCA-CGGGCa -5'
23764 5' -59 NC_005261.1 + 138112 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 73405 0.67 0.683013
Target:  5'- cACCAgGUACG-GGGCCGCGaaccggGCCUGg -3'
miRNA:   3'- uUGGU-CAUGUgCCUGGCGCa-----CGGGCa -5'
23764 5' -59 NC_005261.1 + 78046 0.67 0.672946
Target:  5'- cAGCCGGUGguCGCGGGCC-CG-GCCCc- -3'
miRNA:   3'- -UUGGUCAU--GUGCCUGGcGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 97098 0.67 0.703015
Target:  5'- gGGCCGGggGCGCcagccGGGCCGCG-GCCgGa -3'
miRNA:   3'- -UUGGUCa-UGUG-----CCUGGCGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 97009 0.67 0.672946
Target:  5'- cGCCAuUGgGCGGGCCGuCGggcgcGCCCGg -3'
miRNA:   3'- uUGGUcAUgUGCCUGGC-GCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 3664 0.67 0.711943
Target:  5'- gAGCgCAGgcCGCGGccggcagGCCGCG-GCCCGc -3'
miRNA:   3'- -UUG-GUCauGUGCC-------UGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 88465 0.67 0.672946
Target:  5'- gAGCguGUGgGCGGGCCGUGccGCgCCGg -3'
miRNA:   3'- -UUGguCAUgUGCCUGGCGCa-CG-GGCa -5'
23764 5' -59 NC_005261.1 + 87014 0.67 0.712932
Target:  5'- aGGCCaAGUGCGCGGccCCGCGcGCCa-- -3'
miRNA:   3'- -UUGG-UCAUGUGCCu-GGCGCaCGGgca -5'
23764 5' -59 NC_005261.1 + 95700 0.67 0.712932
Target:  5'- cGCgAGUaugcGCGCGGGCuCGCGcucggGCCCGc -3'
miRNA:   3'- uUGgUCA----UGUGCCUG-GCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 441 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 47547 0.67 0.712932
Target:  5'- -cCCGG-GCGCGGcgaaguUgGCGUGCCCGUc -3'
miRNA:   3'- uuGGUCaUGUGCCu-----GgCGCACGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.