miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 67642 0.67 0.672946
Target:  5'- cGCCgAGaACGCGGGCCGCccGUCCGc -3'
miRNA:   3'- uUGG-UCaUGUGCCUGGCGcaCGGGCa -5'
23764 5' -59 NC_005261.1 + 97009 0.67 0.672946
Target:  5'- cGCCAuUGgGCGGGCCGuCGggcgcGCCCGg -3'
miRNA:   3'- uUGGUcAUgUGCCUGGC-GCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 441 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 87014 0.67 0.712932
Target:  5'- aGGCCaAGUGCGCGGccCCGCGcGCCa-- -3'
miRNA:   3'- -UUGG-UCAUGUGCCu-GGCGCaCGGgca -5'
23764 5' -59 NC_005261.1 + 95700 0.67 0.712932
Target:  5'- cGCgAGUaugcGCGCGGGCuCGCGcucggGCCCGc -3'
miRNA:   3'- uUGgUCA----UGUGCCUG-GCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 36826 0.67 0.703015
Target:  5'- -cCCGGUAUGCGGuGCCG-GcGCCCGg -3'
miRNA:   3'- uuGGUCAUGUGCC-UGGCgCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 138112 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 28489 0.67 0.71688
Target:  5'- cGACCuGUACgaccucaucgaguccGCGGACCuCG-GCCCGg -3'
miRNA:   3'- -UUGGuCAUG---------------UGCCUGGcGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 100685 0.67 0.693039
Target:  5'- cGCgAGUGCAcCGcGGCCGCGgcgcgcgccGCCCGa -3'
miRNA:   3'- uUGgUCAUGU-GC-CUGGCGCa--------CGGGCa -5'
23764 5' -59 NC_005261.1 + 111535 0.67 0.703015
Target:  5'- cAGCgGGcgACgcguucauGCGGACCGCcUGCCCGg -3'
miRNA:   3'- -UUGgUCa-UG--------UGCCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 3664 0.67 0.711943
Target:  5'- gAGCgCAGgcCGCGGccggcagGCCGCG-GCCCGc -3'
miRNA:   3'- -UUG-GUCauGUGCC-------UGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 97098 0.67 0.703015
Target:  5'- gGGCCGGggGCGCcagccGGGCCGCG-GCCgGa -3'
miRNA:   3'- -UUGGUCa-UGUG-----CCUGGCGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 31978 0.67 0.703015
Target:  5'- cGCCuGggccCGCGcACCGCgGUGCCCGUg -3'
miRNA:   3'- uUGGuCau--GUGCcUGGCG-CACGGGCA- -5'
23764 5' -59 NC_005261.1 + 58909 0.67 0.693039
Target:  5'- cGCCAGcGCGCGcACCaGCGcGCCCGc -3'
miRNA:   3'- uUGGUCaUGUGCcUGG-CGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 47547 0.67 0.712932
Target:  5'- -cCCGG-GCGCGGcgaaguUgGCGUGCCCGUc -3'
miRNA:   3'- uuGGUCaUGUGCCu-----GgCGCACGGGCA- -5'
23764 5' -59 NC_005261.1 + 30720 0.68 0.632433
Target:  5'- -cCCGGcGC-CGGGCCGCcagGCCCGa -3'
miRNA:   3'- uuGGUCaUGuGCCUGGCGca-CGGGCa -5'
23764 5' -59 NC_005261.1 + 60936 0.68 0.652722
Target:  5'- cGACC----CGCGGGCCGUG-GCCCGa -3'
miRNA:   3'- -UUGGucauGUGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 120500 0.68 0.642581
Target:  5'- cACCGGcUACcCGGcGCCGC-UGCCCGa -3'
miRNA:   3'- uUGGUC-AUGuGCC-UGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 68965 0.68 0.642581
Target:  5'- gGACCuGGUGCGCGccACCGCG-GCCCu- -3'
miRNA:   3'- -UUGG-UCAUGUGCc-UGGCGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 78863 0.68 0.632433
Target:  5'- cGCCGGaGCGCGaGCCGCGUcaGCCgGUu -3'
miRNA:   3'- uUGGUCaUGUGCcUGGCGCA--CGGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.