miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 103782 0.7 0.531134
Target:  5'- -cCCAGgcCGCGGGCCGUcuucgguGUGCgCCGUu -3'
miRNA:   3'- uuGGUCauGUGCCUGGCG-------CACG-GGCA- -5'
23764 5' -59 NC_005261.1 + 49063 0.7 0.528197
Target:  5'- cGGCCAGguucgcgaagcggGCACGcGCCGCGgGCCCGc -3'
miRNA:   3'- -UUGGUCa------------UGUGCcUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 93666 0.7 0.522342
Target:  5'- cACCGGUcCGCGGGCgGCG-GCgCCGg -3'
miRNA:   3'- uUGGUCAuGUGCCUGgCGCaCG-GGCa -5'
23764 5' -59 NC_005261.1 + 34410 0.7 0.493468
Target:  5'- cGACCGGguggcGCGCGGcCCGCGccUGCCCc- -3'
miRNA:   3'- -UUGGUCa----UGUGCCuGGCGC--ACGGGca -5'
23764 5' -59 NC_005261.1 + 136924 0.69 0.588885
Target:  5'- cGGCCgcggcgcaugugguGGUACAUGGGCCGCGUcGUCgGg -3'
miRNA:   3'- -UUGG--------------UCAUGUGCCUGGCGCA-CGGgCa -5'
23764 5' -59 NC_005261.1 + 105216 0.69 0.581835
Target:  5'- -cCCGccGCGCGGGCCGCG-GCCgCGg -3'
miRNA:   3'- uuGGUcaUGUGCCUGGCGCaCGG-GCa -5'
23764 5' -59 NC_005261.1 + 1735 0.69 0.581835
Target:  5'- cACCgcGGUGCGCGGGCCcaggcGCGUGgccaCCGUg -3'
miRNA:   3'- uUGG--UCAUGUGCCUGG-----CGCACg---GGCA- -5'
23764 5' -59 NC_005261.1 + 49661 0.69 0.58083
Target:  5'- cGACUGGUACACcgagaccaugucgGGGCCGUG-GCCCa- -3'
miRNA:   3'- -UUGGUCAUGUG-------------CCUGGCGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 62196 0.69 0.568791
Target:  5'- aGACCaugugcagcgcgagGGUGCGCGcGGCCGCGUcugcGCCCu- -3'
miRNA:   3'- -UUGG--------------UCAUGUGC-CUGGCGCA----CGGGca -5'
23764 5' -59 NC_005261.1 + 22737 0.69 0.561797
Target:  5'- cGCCAGUcggGCGCgGGGCgGCGgcgGCCCa- -3'
miRNA:   3'- uUGGUCA---UGUG-CCUGgCGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 108877 0.69 0.551847
Target:  5'- cAGCgGGUGgACGacGGCCGCGcUGCCCGc -3'
miRNA:   3'- -UUGgUCAUgUGC--CUGGCGC-ACGGGCa -5'
23764 5' -59 NC_005261.1 + 92302 0.69 0.551847
Target:  5'- aGGCCAGgaugagcgccGCGCGGuCCGCGcgGCCCa- -3'
miRNA:   3'- -UUGGUCa---------UGUGCCuGGCGCa-CGGGca -5'
23764 5' -59 NC_005261.1 + 81012 0.69 0.551847
Target:  5'- -cCCAGgccCACGGGCaCGCG-GUCCGUg -3'
miRNA:   3'- uuGGUCau-GUGCCUG-GCGCaCGGGCA- -5'
23764 5' -59 NC_005261.1 + 68115 0.69 0.551847
Target:  5'- gGGCUGGagcUGCGCGGGCCGCG-GCgCGg -3'
miRNA:   3'- -UUGGUC---AUGUGCCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 50515 0.68 0.622284
Target:  5'- cAGCCAGcGCAgcaGGGCCGuCGUcuuGCCCGa -3'
miRNA:   3'- -UUGGUCaUGUg--CCUGGC-GCA---CGGGCa -5'
23764 5' -59 NC_005261.1 + 29405 0.68 0.612143
Target:  5'- cGGCCGcgcgcUACGCGGcgGCCGCGggGCCCGc -3'
miRNA:   3'- -UUGGUc----AUGUGCC--UGGCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 133821 0.68 0.612143
Target:  5'- cGACgAGgcgcUGCGCGG-CCGCGUGCgcgCCGUg -3'
miRNA:   3'- -UUGgUC----AUGUGCCuGGCGCACG---GGCA- -5'
23764 5' -59 NC_005261.1 + 94180 0.68 0.612143
Target:  5'- cACCAGcgugGCGCGGugCGCG-GCCaggaaGUg -3'
miRNA:   3'- uUGGUCa---UGUGCCugGCGCaCGGg----CA- -5'
23764 5' -59 NC_005261.1 + 89079 0.68 0.602016
Target:  5'- cGGCUGGUAC-CGG-CUGCG-GCCCGg -3'
miRNA:   3'- -UUGGUCAUGuGCCuGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 77452 0.68 0.622284
Target:  5'- cAGCCAGgcccgggGCGCGGcugcaGCCGCGcccccGCCCGc -3'
miRNA:   3'- -UUGGUCa------UGUGCC-----UGGCGCa----CGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.