miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 120005 0.74 0.295864
Target:  5'- cGCCGGcUACGCGG-CCGUGUGCCgCGc -3'
miRNA:   3'- uUGGUC-AUGUGCCuGGCGCACGG-GCa -5'
23764 5' -59 NC_005261.1 + 34454 0.74 0.309738
Target:  5'- cGCCGGgGCACGGGCCGgGgGcCCCGUa -3'
miRNA:   3'- uUGGUCaUGUGCCUGGCgCaC-GGGCA- -5'
23764 5' -59 NC_005261.1 + 23233 0.73 0.338957
Target:  5'- aAGCCGGUGCAgCGGGCCGgCcUGCUCGg -3'
miRNA:   3'- -UUGGUCAUGU-GCCUGGC-GcACGGGCa -5'
23764 5' -59 NC_005261.1 + 33595 0.73 0.362152
Target:  5'- cACCAGgggcggcgccgGCGCGGGCgGCGggGCCCGg -3'
miRNA:   3'- uUGGUCa----------UGUGCCUGgCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 106027 0.73 0.370126
Target:  5'- gGACCGGagGCACGccACCGCGcUGCCCGg -3'
miRNA:   3'- -UUGGUCa-UGUGCc-UGGCGC-ACGGGCa -5'
23764 5' -59 NC_005261.1 + 118366 0.73 0.378218
Target:  5'- cGGCCGGgcGCugGGGCgCGCG-GCCCGa -3'
miRNA:   3'- -UUGGUCa-UGugCCUG-GCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 108173 0.72 0.386428
Target:  5'- cGCCAGgGCGCGcGGCCGCG-GCuCCGg -3'
miRNA:   3'- uUGGUCaUGUGC-CUGGCGCaCG-GGCa -5'
23764 5' -59 NC_005261.1 + 121177 0.72 0.403198
Target:  5'- cGCuCGGUGCACgGGGCCGgGgccggGCCCGg -3'
miRNA:   3'- uUG-GUCAUGUG-CCUGGCgCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 108421 0.72 0.403198
Target:  5'- cGCCugcGUGCACGGcaACCGCGU-CCCGg -3'
miRNA:   3'- uUGGu--CAUGUGCC--UGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 30020 0.72 0.411753
Target:  5'- -cCCGGUGCucucggcugcaGCGGGCCGCG-GCCUGc -3'
miRNA:   3'- uuGGUCAUG-----------UGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 3590 0.72 0.426553
Target:  5'- cACCGcGU-CGCGGGCCGCGccaagcagcucagcUGCCCGg -3'
miRNA:   3'- uUGGU-CAuGUGCCUGGCGC--------------ACGGGCa -5'
23764 5' -59 NC_005261.1 + 13039 0.72 0.429197
Target:  5'- gAGCCAGgGCGCgGGGCCGCGcgcGCCCc- -3'
miRNA:   3'- -UUGGUCaUGUG-CCUGGCGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 126194 0.71 0.456158
Target:  5'- cGACCAGccccGCGCGGACCaGCGgcaGCCCc- -3'
miRNA:   3'- -UUGGUCa---UGUGCCUGG-CGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 60714 0.71 0.464423
Target:  5'- --gCGGcGCACGGcggugccACCGCGUGCUCGUg -3'
miRNA:   3'- uugGUCaUGUGCC-------UGGCGCACGGGCA- -5'
23764 5' -59 NC_005261.1 + 98702 0.71 0.47463
Target:  5'- cGGCCGGaGCugGGGCCGgG-GUCCGg -3'
miRNA:   3'- -UUGGUCaUGugCCUGGCgCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 34410 0.7 0.493468
Target:  5'- cGACCGGguggcGCGCGGcCCGCGccUGCCCc- -3'
miRNA:   3'- -UUGGUCa----UGUGCCuGGCGC--ACGGGca -5'
23764 5' -59 NC_005261.1 + 93666 0.7 0.522342
Target:  5'- cACCGGUcCGCGGGCgGCG-GCgCCGg -3'
miRNA:   3'- uUGGUCAuGUGCCUGgCGCaCG-GGCa -5'
23764 5' -59 NC_005261.1 + 49063 0.7 0.528197
Target:  5'- cGGCCAGguucgcgaagcggGCACGcGCCGCGgGCCCGc -3'
miRNA:   3'- -UUGGUCa------------UGUGCcUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 103782 0.7 0.531134
Target:  5'- -cCCAGgcCGCGGGCCGUcuucgguGUGCgCCGUu -3'
miRNA:   3'- uuGGUCauGUGCCUGGCG-------CACG-GGCA- -5'
23764 5' -59 NC_005261.1 + 84851 0.7 0.532114
Target:  5'- cACCAc--CGCGGGCCGCGUGgCCa- -3'
miRNA:   3'- uUGGUcauGUGCCUGGCGCACgGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.