Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23764 | 5' | -59 | NC_005261.1 | + | 103412 | 0.7 | 0.532114 |
Target: 5'- -uCCAGcuccGCGCGGGCCGCG-GCCaCGc -3' miRNA: 3'- uuGGUCa---UGUGCCUGGCGCaCGG-GCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 67121 | 0.7 | 0.54195 |
Target: 5'- cGCgCAGUGCgGCGGcccgACCGCGgcGCCCGUu -3' miRNA: 3'- uUG-GUCAUG-UGCC----UGGCGCa-CGGGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 101826 | 0.7 | 0.54195 |
Target: 5'- -uCCAGcGCGCGGcugaucuccGCCGCGcGCCCGc -3' miRNA: 3'- uuGGUCaUGUGCC---------UGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 90793 | 0.7 | 0.54195 |
Target: 5'- cGGCCGGcGCGCGcuACCGCGUGCgCUGg -3' miRNA: 3'- -UUGGUCaUGUGCc-UGGCGCACG-GGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 108877 | 0.69 | 0.551847 |
Target: 5'- cAGCgGGUGgACGacGGCCGCGcUGCCCGc -3' miRNA: 3'- -UUGgUCAUgUGC--CUGGCGC-ACGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 92302 | 0.69 | 0.551847 |
Target: 5'- aGGCCAGgaugagcgccGCGCGGuCCGCGcgGCCCa- -3' miRNA: 3'- -UUGGUCa---------UGUGCCuGGCGCa-CGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 81012 | 0.69 | 0.551847 |
Target: 5'- -cCCAGgccCACGGGCaCGCG-GUCCGUg -3' miRNA: 3'- uuGGUCau-GUGCCUG-GCGCaCGGGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 68115 | 0.69 | 0.551847 |
Target: 5'- gGGCUGGagcUGCGCGGGCCGCG-GCgCGg -3' miRNA: 3'- -UUGGUC---AUGUGCCUGGCGCaCGgGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 22737 | 0.69 | 0.561797 |
Target: 5'- cGCCAGUcggGCGCgGGGCgGCGgcgGCCCa- -3' miRNA: 3'- uUGGUCA---UGUG-CCUGgCGCa--CGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 62196 | 0.69 | 0.568791 |
Target: 5'- aGACCaugugcagcgcgagGGUGCGCGcGGCCGCGUcugcGCCCu- -3' miRNA: 3'- -UUGG--------------UCAUGUGC-CUGGCGCA----CGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 49661 | 0.69 | 0.58083 |
Target: 5'- cGACUGGUACACcgagaccaugucgGGGCCGUG-GCCCa- -3' miRNA: 3'- -UUGGUCAUGUG-------------CCUGGCGCaCGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 1735 | 0.69 | 0.581835 |
Target: 5'- cACCgcGGUGCGCGGGCCcaggcGCGUGgccaCCGUg -3' miRNA: 3'- uUGG--UCAUGUGCCUGG-----CGCACg---GGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 105216 | 0.69 | 0.581835 |
Target: 5'- -cCCGccGCGCGGGCCGCG-GCCgCGg -3' miRNA: 3'- uuGGUcaUGUGCCUGGCGCaCGG-GCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 136924 | 0.69 | 0.588885 |
Target: 5'- cGGCCgcggcgcaugugguGGUACAUGGGCCGCGUcGUCgGg -3' miRNA: 3'- -UUGG--------------UCAUGUGCCUGGCGCA-CGGgCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 23480 | 0.68 | 0.601004 |
Target: 5'- cGGCgAGUGCGCGGGCCcgccugggcaggcGCGgGCCCu- -3' miRNA: 3'- -UUGgUCAUGUGCCUGG-------------CGCaCGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 89079 | 0.68 | 0.602016 |
Target: 5'- cGGCUGGUAC-CGG-CUGCG-GCCCGg -3' miRNA: 3'- -UUGGUCAUGuGCCuGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 29405 | 0.68 | 0.612143 |
Target: 5'- cGGCCGcgcgcUACGCGGcgGCCGCGggGCCCGc -3' miRNA: 3'- -UUGGUc----AUGUGCC--UGGCGCa-CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 133821 | 0.68 | 0.612143 |
Target: 5'- cGACgAGgcgcUGCGCGG-CCGCGUGCgcgCCGUg -3' miRNA: 3'- -UUGgUC----AUGUGCCuGGCGCACG---GGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 94180 | 0.68 | 0.612143 |
Target: 5'- cACCAGcgugGCGCGGugCGCG-GCCaggaaGUg -3' miRNA: 3'- uUGGUCa---UGUGCCugGCGCaCGGg----CA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 77452 | 0.68 | 0.622284 |
Target: 5'- cAGCCAGgcccgggGCGCGGcugcaGCCGCGcccccGCCCGc -3' miRNA: 3'- -UUGGUCa------UGUGCC-----UGGCGCa----CGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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