miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 131921 0.66 0.732554
Target:  5'- gGGCUuuuuGgcgcGCGCGGgACCGCgGUGCCCGc -3'
miRNA:   3'- -UUGGu---Ca---UGUGCC-UGGCG-CACGGGCa -5'
23764 5' -59 NC_005261.1 + 134252 0.66 0.732554
Target:  5'- cGCCc-UGCGCGG-CCGCGUaCCCGa -3'
miRNA:   3'- uUGGucAUGUGCCuGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 38935 0.66 0.732554
Target:  5'- aAGCCGGcgGCcggGCGGGCCGCG-GCgCGc -3'
miRNA:   3'- -UUGGUCa-UG---UGCCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 114692 0.66 0.732554
Target:  5'- -uUgAGUacaGCGCGGACCGCuUGCUCGc -3'
miRNA:   3'- uuGgUCA---UGUGCCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 46423 0.66 0.731581
Target:  5'- gAGCCAGUACuuguugaccgaccACGaGACgGCGUGCgUGa -3'
miRNA:   3'- -UUGGUCAUG-------------UGC-CUGgCGCACGgGCa -5'
23764 5' -59 NC_005261.1 + 66739 0.66 0.731581
Target:  5'- cACCAuguaguuGUGCACGGGCUgguccaccggGUGUGgCCCGUc -3'
miRNA:   3'- uUGGU-------CAUGUGCCUGG----------CGCAC-GGGCA- -5'
23764 5' -59 NC_005261.1 + 108302 0.66 0.729631
Target:  5'- cGCC--UGCACGGcgucccagacggccGCCGCGUGCuCCGc -3'
miRNA:   3'- uUGGucAUGUGCC--------------UGGCGCACG-GGCa -5'
23764 5' -59 NC_005261.1 + 41064 0.66 0.722782
Target:  5'- gAGCCGGcgGCGCGGuccGCCGCcaGCCCc- -3'
miRNA:   3'- -UUGGUCa-UGUGCC---UGGCGcaCGGGca -5'
23764 5' -59 NC_005261.1 + 118485 0.66 0.722782
Target:  5'- uGCCGGUAUGCGGcGCUGCGgacCCUGg -3'
miRNA:   3'- uUGGUCAUGUGCC-UGGCGCac-GGGCa -5'
23764 5' -59 NC_005261.1 + 28489 0.67 0.71688
Target:  5'- cGACCuGUACgaccucaucgaguccGCGGACCuCG-GCCCGg -3'
miRNA:   3'- -UUGGuCAUG---------------UGCCUGGcGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 47547 0.67 0.712932
Target:  5'- -cCCGG-GCGCGGcgaaguUgGCGUGCCCGUc -3'
miRNA:   3'- uuGGUCaUGUGCCu-----GgCGCACGGGCA- -5'
23764 5' -59 NC_005261.1 + 441 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 95700 0.67 0.712932
Target:  5'- cGCgAGUaugcGCGCGGGCuCGCGcucggGCCCGc -3'
miRNA:   3'- uUGgUCA----UGUGCCUG-GCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 87014 0.67 0.712932
Target:  5'- aGGCCaAGUGCGCGGccCCGCGcGCCa-- -3'
miRNA:   3'- -UUGG-UCAUGUGCCu-GGCGCaCGGgca -5'
23764 5' -59 NC_005261.1 + 138112 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 3664 0.67 0.711943
Target:  5'- gAGCgCAGgcCGCGGccggcagGCCGCG-GCCCGc -3'
miRNA:   3'- -UUG-GUCauGUGCC-------UGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 36826 0.67 0.703015
Target:  5'- -cCCGGUAUGCGGuGCCG-GcGCCCGg -3'
miRNA:   3'- uuGGUCAUGUGCC-UGGCgCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 111535 0.67 0.703015
Target:  5'- cAGCgGGcgACgcguucauGCGGACCGCcUGCCCGg -3'
miRNA:   3'- -UUGgUCa-UG--------UGCCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 97098 0.67 0.703015
Target:  5'- gGGCCGGggGCGCcagccGGGCCGCG-GCCgGa -3'
miRNA:   3'- -UUGGUCa-UGUG-----CCUGGCGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 31978 0.67 0.703015
Target:  5'- cGCCuGggccCGCGcACCGCgGUGCCCGUg -3'
miRNA:   3'- uUGGuCau--GUGCcUGGCG-CACGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.