miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 28764 0.67 0.693039
Target:  5'- cGGCCGGggGCGCcuGGGCCGCG-GCgCGg -3'
miRNA:   3'- -UUGGUCa-UGUG--CCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 100685 0.67 0.693039
Target:  5'- cGCgAGUGCAcCGcGGCCGCGgcgcgcgccGCCCGa -3'
miRNA:   3'- uUGgUCAUGU-GC-CUGGCGCa--------CGGGCa -5'
23764 5' -59 NC_005261.1 + 95609 0.67 0.693039
Target:  5'- cGGCCGGcUGC-UGGACCGCGcgGUCCa- -3'
miRNA:   3'- -UUGGUC-AUGuGCCUGGCGCa-CGGGca -5'
23764 5' -59 NC_005261.1 + 58909 0.67 0.693039
Target:  5'- cGCCAGcGCGCGcACCaGCGcGCCCGc -3'
miRNA:   3'- uUGGUCaUGUGCcUGG-CGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 72844 0.67 0.690036
Target:  5'- cGGCCAGgGCGCcagcgcccaggcguGGACCGCGggcagGUCCGc -3'
miRNA:   3'- -UUGGUCaUGUG--------------CCUGGCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 74574 0.67 0.683013
Target:  5'- cACgCGGU-CGCGGACCGCGUcUUCGUg -3'
miRNA:   3'- uUG-GUCAuGUGCCUGGCGCAcGGGCA- -5'
23764 5' -59 NC_005261.1 + 130584 0.67 0.683013
Target:  5'- cGCCGccGCGCGGccCCGCGccugGCCCGUc -3'
miRNA:   3'- uUGGUcaUGUGCCu-GGCGCa---CGGGCA- -5'
23764 5' -59 NC_005261.1 + 75270 0.67 0.683013
Target:  5'- cGGCCuucgAGUGCGCGGugC-UGUGCCUGc -3'
miRNA:   3'- -UUGG----UCAUGUGCCugGcGCACGGGCa -5'
23764 5' -59 NC_005261.1 + 73405 0.67 0.683013
Target:  5'- cACCAgGUACG-GGGCCGCGaaccggGCCUGg -3'
miRNA:   3'- uUGGU-CAUGUgCCUGGCGCa-----CGGGCa -5'
23764 5' -59 NC_005261.1 + 60072 0.67 0.683013
Target:  5'- cGGCCGGUcCGCGGGCUGCGUGg---- -3'
miRNA:   3'- -UUGGUCAuGUGCCUGGCGCACgggca -5'
23764 5' -59 NC_005261.1 + 78046 0.67 0.672946
Target:  5'- cAGCCGGUGguCGCGGGCC-CG-GCCCc- -3'
miRNA:   3'- -UUGGUCAU--GUGCCUGGcGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 88465 0.67 0.672946
Target:  5'- gAGCguGUGgGCGGGCCGUGccGCgCCGg -3'
miRNA:   3'- -UUGguCAUgUGCCUGGCGCa-CG-GGCa -5'
23764 5' -59 NC_005261.1 + 67642 0.67 0.672946
Target:  5'- cGCCgAGaACGCGGGCCGCccGUCCGc -3'
miRNA:   3'- uUGG-UCaUGUGCCUGGCGcaCGGGCa -5'
23764 5' -59 NC_005261.1 + 97009 0.67 0.672946
Target:  5'- cGCCAuUGgGCGGGCCGuCGggcgcGCCCGg -3'
miRNA:   3'- uUGGUcAUgUGCCUGGC-GCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 71768 0.67 0.662846
Target:  5'- -uCCAGc---CGGACCGCG-GCCCGc -3'
miRNA:   3'- uuGGUCauguGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 44291 0.68 0.652722
Target:  5'- cGCCAGcgGCGggccaGGGCCGC-UGCCCGc -3'
miRNA:   3'- uUGGUCa-UGUg----CCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 60936 0.68 0.652722
Target:  5'- cGACC----CGCGGGCCGUG-GCCCGa -3'
miRNA:   3'- -UUGGucauGUGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 120500 0.68 0.642581
Target:  5'- cACCGGcUACcCGGcGCCGC-UGCCCGa -3'
miRNA:   3'- uUGGUC-AUGuGCC-UGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 68965 0.68 0.642581
Target:  5'- gGACCuGGUGCGCGccACCGCG-GCCCu- -3'
miRNA:   3'- -UUGG-UCAUGUGCc-UGGCGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 30720 0.68 0.632433
Target:  5'- -cCCGGcGC-CGGGCCGCcagGCCCGa -3'
miRNA:   3'- uuGGUCaUGuGCCUGGCGca-CGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.