miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 441 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 1735 0.69 0.581835
Target:  5'- cACCgcGGUGCGCGGGCCcaggcGCGUGgccaCCGUg -3'
miRNA:   3'- uUGG--UCAUGUGCCUGG-----CGCACg---GGCA- -5'
23764 5' -59 NC_005261.1 + 1915 0.66 0.7707
Target:  5'- aGGCCAGcGCGCGGcgcacugcGCCGCGggcaGCaCCGc -3'
miRNA:   3'- -UUGGUCaUGUGCC--------UGGCGCa---CG-GGCa -5'
23764 5' -59 NC_005261.1 + 3590 0.72 0.426553
Target:  5'- cACCGcGU-CGCGGGCCGCGccaagcagcucagcUGCCCGg -3'
miRNA:   3'- uUGGU-CAuGUGCCUGGCGC--------------ACGGGCa -5'
23764 5' -59 NC_005261.1 + 3664 0.67 0.711943
Target:  5'- gAGCgCAGgcCGCGGccggcagGCCGCG-GCCCGc -3'
miRNA:   3'- -UUG-GUCauGUGCC-------UGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 13039 0.72 0.429197
Target:  5'- gAGCCAGgGCGCgGGGCCGCGcgcGCCCc- -3'
miRNA:   3'- -UUGGUCaUGUG-CCUGGCGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 22737 0.69 0.561797
Target:  5'- cGCCAGUcggGCGCgGGGCgGCGgcgGCCCa- -3'
miRNA:   3'- uUGGUCA---UGUG-CCUGgCGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 23233 0.73 0.338957
Target:  5'- aAGCCGGUGCAgCGGGCCGgCcUGCUCGg -3'
miRNA:   3'- -UUGGUCAUGU-GCCUGGC-GcACGGGCa -5'
23764 5' -59 NC_005261.1 + 23480 0.68 0.601004
Target:  5'- cGGCgAGUGCGCGGGCCcgccugggcaggcGCGgGCCCu- -3'
miRNA:   3'- -UUGgUCAUGUGCCUGG-------------CGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 28489 0.67 0.71688
Target:  5'- cGACCuGUACgaccucaucgaguccGCGGACCuCG-GCCCGg -3'
miRNA:   3'- -UUGGuCAUG---------------UGCCUGGcGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 28764 0.67 0.693039
Target:  5'- cGGCCGGggGCGCcuGGGCCGCG-GCgCGg -3'
miRNA:   3'- -UUGGUCa-UGUG--CCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 29405 0.68 0.612143
Target:  5'- cGGCCGcgcgcUACGCGGcgGCCGCGggGCCCGc -3'
miRNA:   3'- -UUGGUc----AUGUGCC--UGGCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 29493 0.66 0.732554
Target:  5'- gGACCugguGUACGCGcGCCGCGacgccaugGCCUGg -3'
miRNA:   3'- -UUGGu---CAUGUGCcUGGCGCa-------CGGGCa -5'
23764 5' -59 NC_005261.1 + 30020 0.72 0.411753
Target:  5'- -cCCGGUGCucucggcugcaGCGGGCCGCG-GCCUGc -3'
miRNA:   3'- uuGGUCAUG-----------UGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 30079 0.66 0.761324
Target:  5'- cGCUAGcgGCGCacccGGAgCGCGUGCuCCGg -3'
miRNA:   3'- uUGGUCa-UGUG----CCUgGCGCACG-GGCa -5'
23764 5' -59 NC_005261.1 + 30247 0.66 0.755643
Target:  5'- uGGCgCGGUACucgacgcgcggcgcgGCGGcCCGCGcGCCCGc -3'
miRNA:   3'- -UUG-GUCAUG---------------UGCCuGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 30720 0.68 0.632433
Target:  5'- -cCCGGcGC-CGGGCCGCcagGCCCGa -3'
miRNA:   3'- uuGGUCaUGuGCCUGGCGca-CGGGCa -5'
23764 5' -59 NC_005261.1 + 31978 0.67 0.703015
Target:  5'- cGCCuGggccCGCGcACCGCgGUGCCCGUg -3'
miRNA:   3'- uUGGuCau--GUGCcUGGCG-CACGGGCA- -5'
23764 5' -59 NC_005261.1 + 33595 0.73 0.362152
Target:  5'- cACCAGgggcggcgccgGCGCGGGCgGCGggGCCCGg -3'
miRNA:   3'- uUGGUCa----------UGUGCCUGgCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 33826 0.66 0.751834
Target:  5'- cGGCCGGgggGCGCGGGCCcccuggcgcuggGCGgGCCgGg -3'
miRNA:   3'- -UUGGUCa--UGUGCCUGG------------CGCaCGGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.