miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 34410 0.7 0.493468
Target:  5'- cGACCGGguggcGCGCGGcCCGCGccUGCCCc- -3'
miRNA:   3'- -UUGGUCa----UGUGCCuGGCGC--ACGGGca -5'
23764 5' -59 NC_005261.1 + 34454 0.74 0.309738
Target:  5'- cGCCGGgGCACGGGCCGgGgGcCCCGUa -3'
miRNA:   3'- uUGGUCaUGUGCCUGGCgCaC-GGGCA- -5'
23764 5' -59 NC_005261.1 + 36826 0.67 0.703015
Target:  5'- -cCCGGUAUGCGGuGCCG-GcGCCCGg -3'
miRNA:   3'- uuGGUCAUGUGCC-UGGCgCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 38935 0.66 0.732554
Target:  5'- aAGCCGGcgGCcggGCGGGCCGCG-GCgCGc -3'
miRNA:   3'- -UUGGUCa-UG---UGCCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 40044 0.66 0.742242
Target:  5'- cGACCAGcgugGCgACGGGCC-CGUGCUgGa -3'
miRNA:   3'- -UUGGUCa---UG-UGCCUGGcGCACGGgCa -5'
23764 5' -59 NC_005261.1 + 41064 0.66 0.722782
Target:  5'- gAGCCGGcgGCGCGGuccGCCGCcaGCCCc- -3'
miRNA:   3'- -UUGGUCa-UGUGCC---UGGCGcaCGGGca -5'
23764 5' -59 NC_005261.1 + 44291 0.68 0.652722
Target:  5'- cGCCAGcgGCGggccaGGGCCGC-UGCCCGc -3'
miRNA:   3'- uUGGUCa-UGUg----CCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 44897 0.66 0.761324
Target:  5'- uGGCCGgggcGUACACGGACCcacGCcggGCCCa- -3'
miRNA:   3'- -UUGGU----CAUGUGCCUGG---CGca-CGGGca -5'
23764 5' -59 NC_005261.1 + 46423 0.66 0.731581
Target:  5'- gAGCCAGUACuuguugaccgaccACGaGACgGCGUGCgUGa -3'
miRNA:   3'- -UUGGUCAUG-------------UGC-CUGgCGCACGgGCa -5'
23764 5' -59 NC_005261.1 + 47547 0.67 0.712932
Target:  5'- -cCCGG-GCGCGGcgaaguUgGCGUGCCCGUc -3'
miRNA:   3'- uuGGUCaUGUGCCu-----GgCGCACGGGCA- -5'
23764 5' -59 NC_005261.1 + 48606 0.68 0.632433
Target:  5'- cACCGcGUGCGCGG-CCGCGcccaGCCCc- -3'
miRNA:   3'- uUGGU-CAUGUGCCuGGCGCa---CGGGca -5'
23764 5' -59 NC_005261.1 + 49063 0.7 0.528197
Target:  5'- cGGCCAGguucgcgaagcggGCACGcGCCGCGgGCCCGc -3'
miRNA:   3'- -UUGGUCa------------UGUGCcUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 49661 0.69 0.58083
Target:  5'- cGACUGGUACACcgagaccaugucgGGGCCGUG-GCCCa- -3'
miRNA:   3'- -UUGGUCAUGUG-------------CCUGGCGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 50515 0.68 0.622284
Target:  5'- cAGCCAGcGCAgcaGGGCCGuCGUcuuGCCCGa -3'
miRNA:   3'- -UUGGUCaUGUg--CCUGGC-GCA---CGGGCa -5'
23764 5' -59 NC_005261.1 + 58489 0.66 0.751834
Target:  5'- aGGCCGGcGCGCGG-CCGCuuuuggcGCCCGc -3'
miRNA:   3'- -UUGGUCaUGUGCCuGGCGca-----CGGGCa -5'
23764 5' -59 NC_005261.1 + 58909 0.67 0.693039
Target:  5'- cGCCAGcGCGCGcACCaGCGcGCCCGc -3'
miRNA:   3'- uUGGUCaUGUGCcUGG-CGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 60072 0.67 0.683013
Target:  5'- cGGCCGGUcCGCGGGCUGCGUGg---- -3'
miRNA:   3'- -UUGGUCAuGUGCCUGGCGCACgggca -5'
23764 5' -59 NC_005261.1 + 60714 0.71 0.464423
Target:  5'- --gCGGcGCACGGcggugccACCGCGUGCUCGUg -3'
miRNA:   3'- uugGUCaUGUGCC-------UGGCGCACGGGCA- -5'
23764 5' -59 NC_005261.1 + 60936 0.68 0.652722
Target:  5'- cGACC----CGCGGGCCGUG-GCCCGa -3'
miRNA:   3'- -UUGGucauGUGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 62196 0.69 0.568791
Target:  5'- aGACCaugugcagcgcgagGGUGCGCGcGGCCGCGUcugcGCCCu- -3'
miRNA:   3'- -UUGG--------------UCAUGUGC-CUGGCGCA----CGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.