miRNA display CGI


Results 41 - 60 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 66739 0.66 0.731581
Target:  5'- cACCAuguaguuGUGCACGGGCUgguccaccggGUGUGgCCCGUc -3'
miRNA:   3'- uUGGU-------CAUGUGCCUGG----------CGCAC-GGGCA- -5'
23764 5' -59 NC_005261.1 + 67121 0.7 0.54195
Target:  5'- cGCgCAGUGCgGCGGcccgACCGCGgcGCCCGUu -3'
miRNA:   3'- uUG-GUCAUG-UGCC----UGGCGCa-CGGGCA- -5'
23764 5' -59 NC_005261.1 + 67642 0.67 0.672946
Target:  5'- cGCCgAGaACGCGGGCCGCccGUCCGc -3'
miRNA:   3'- uUGG-UCaUGUGCCUGGCGcaCGGGCa -5'
23764 5' -59 NC_005261.1 + 68115 0.69 0.551847
Target:  5'- gGGCUGGagcUGCGCGGGCCGCG-GCgCGg -3'
miRNA:   3'- -UUGGUC---AUGUGCCUGGCGCaCGgGCa -5'
23764 5' -59 NC_005261.1 + 68965 0.68 0.642581
Target:  5'- gGACCuGGUGCGCGccACCGCG-GCCCu- -3'
miRNA:   3'- -UUGG-UCAUGUGCc-UGGCGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 71768 0.67 0.662846
Target:  5'- -uCCAGc---CGGACCGCG-GCCCGc -3'
miRNA:   3'- uuGGUCauguGCCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 72844 0.67 0.690036
Target:  5'- cGGCCAGgGCGCcagcgcccaggcguGGACCGCGggcagGUCCGc -3'
miRNA:   3'- -UUGGUCaUGUG--------------CCUGGCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 73405 0.67 0.683013
Target:  5'- cACCAgGUACG-GGGCCGCGaaccggGCCUGg -3'
miRNA:   3'- uUGGU-CAUGUgCCUGGCGCa-----CGGGCa -5'
23764 5' -59 NC_005261.1 + 74574 0.67 0.683013
Target:  5'- cACgCGGU-CGCGGACCGCGUcUUCGUg -3'
miRNA:   3'- uUG-GUCAuGUGCCUGGCGCAcGGGCA- -5'
23764 5' -59 NC_005261.1 + 75270 0.67 0.683013
Target:  5'- cGGCCuucgAGUGCGCGGugC-UGUGCCUGc -3'
miRNA:   3'- -UUGG----UCAUGUGCCugGcGCACGGGCa -5'
23764 5' -59 NC_005261.1 + 77452 0.68 0.622284
Target:  5'- cAGCCAGgcccgggGCGCGGcugcaGCCGCGcccccGCCCGc -3'
miRNA:   3'- -UUGGUCa------UGUGCC-----UGGCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 78046 0.67 0.672946
Target:  5'- cAGCCGGUGguCGCGGGCC-CG-GCCCc- -3'
miRNA:   3'- -UUGGUCAU--GUGCCUGGcGCaCGGGca -5'
23764 5' -59 NC_005261.1 + 78863 0.68 0.632433
Target:  5'- cGCCGGaGCGCGaGCCGCGUcaGCCgGUu -3'
miRNA:   3'- uUGGUCaUGUGCcUGGCGCA--CGGgCA- -5'
23764 5' -59 NC_005261.1 + 80091 0.66 0.761324
Target:  5'- gGACCGGcGCGCGcGCCGCGguaccgGCuuGg -3'
miRNA:   3'- -UUGGUCaUGUGCcUGGCGCa-----CGggCa -5'
23764 5' -59 NC_005261.1 + 80656 0.66 0.7707
Target:  5'- uAGCUGGUGugcuCGCGGugCGCGccgucgcggaGCCCGUa -3'
miRNA:   3'- -UUGGUCAU----GUGCCugGCGCa---------CGGGCA- -5'
23764 5' -59 NC_005261.1 + 81012 0.69 0.551847
Target:  5'- -cCCAGgccCACGGGCaCGCG-GUCCGUg -3'
miRNA:   3'- uuGGUCau-GUGCCUG-GCGCaCGGGCA- -5'
23764 5' -59 NC_005261.1 + 84851 0.7 0.532114
Target:  5'- cACCAc--CGCGGGCCGCGUGgCCa- -3'
miRNA:   3'- uUGGUcauGUGCCUGGCGCACgGGca -5'
23764 5' -59 NC_005261.1 + 87014 0.67 0.712932
Target:  5'- aGGCCaAGUGCGCGGccCCGCGcGCCa-- -3'
miRNA:   3'- -UUGG-UCAUGUGCCu-GGCGCaCGGgca -5'
23764 5' -59 NC_005261.1 + 88465 0.67 0.672946
Target:  5'- gAGCguGUGgGCGGGCCGUGccGCgCCGg -3'
miRNA:   3'- -UUGguCAUgUGCCUGGCGCa-CG-GGCa -5'
23764 5' -59 NC_005261.1 + 89079 0.68 0.602016
Target:  5'- cGGCUGGUAC-CGG-CUGCG-GCCCGg -3'
miRNA:   3'- -UUGGUCAUGuGCCuGGCGCaCGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.