miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 138112 0.67 0.712932
Target:  5'- gGACCGGgacggggACGgGGGCCGCGacgGCCgGc -3'
miRNA:   3'- -UUGGUCa------UGUgCCUGGCGCa--CGGgCa -5'
23764 5' -59 NC_005261.1 + 136924 0.69 0.588885
Target:  5'- cGGCCgcggcgcaugugguGGUACAUGGGCCGCGUcGUCgGg -3'
miRNA:   3'- -UUGG--------------UCAUGUGCCUGGCGCA-CGGgCa -5'
23764 5' -59 NC_005261.1 + 134252 0.66 0.732554
Target:  5'- cGCCc-UGCGCGG-CCGCGUaCCCGa -3'
miRNA:   3'- uUGGucAUGUGCCuGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 133821 0.68 0.612143
Target:  5'- cGACgAGgcgcUGCGCGG-CCGCGUGCgcgCCGUg -3'
miRNA:   3'- -UUGgUC----AUGUGCCuGGCGCACG---GGCA- -5'
23764 5' -59 NC_005261.1 + 133647 0.66 0.742242
Target:  5'- cGCCGcUGCGCGaGcGCUGCGUGCUCGc -3'
miRNA:   3'- uUGGUcAUGUGC-C-UGGCGCACGGGCa -5'
23764 5' -59 NC_005261.1 + 131921 0.66 0.732554
Target:  5'- gGGCUuuuuGgcgcGCGCGGgACCGCgGUGCCCGc -3'
miRNA:   3'- -UUGGu---Ca---UGUGCC-UGGCG-CACGGGCa -5'
23764 5' -59 NC_005261.1 + 130584 0.67 0.683013
Target:  5'- cGCCGccGCGCGGccCCGCGccugGCCCGUc -3'
miRNA:   3'- uUGGUcaUGUGCCu-GGCGCa---CGGGCA- -5'
23764 5' -59 NC_005261.1 + 129724 0.66 0.7707
Target:  5'- cGCCGGcUGCAgcggcaGGGCgGCGggGCCCGg -3'
miRNA:   3'- uUGGUC-AUGUg-----CCUGgCGCa-CGGGCa -5'
23764 5' -59 NC_005261.1 + 126194 0.71 0.456158
Target:  5'- cGACCAGccccGCGCGGACCaGCGgcaGCCCc- -3'
miRNA:   3'- -UUGGUCa---UGUGCCUGG-CGCa--CGGGca -5'
23764 5' -59 NC_005261.1 + 123245 0.66 0.761324
Target:  5'- -cCCAG-GCGCGGGCCcCGcccaucGCCCGUg -3'
miRNA:   3'- uuGGUCaUGUGCCUGGcGCa-----CGGGCA- -5'
23764 5' -59 NC_005261.1 + 121177 0.72 0.403198
Target:  5'- cGCuCGGUGCACgGGGCCGgGgccggGCCCGg -3'
miRNA:   3'- uUG-GUCAUGUG-CCUGGCgCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 120500 0.68 0.642581
Target:  5'- cACCGGcUACcCGGcGCCGC-UGCCCGa -3'
miRNA:   3'- uUGGUC-AUGuGCC-UGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 120005 0.74 0.295864
Target:  5'- cGCCGGcUACGCGG-CCGUGUGCCgCGc -3'
miRNA:   3'- uUGGUC-AUGUGCCuGGCGCACGG-GCa -5'
23764 5' -59 NC_005261.1 + 118485 0.66 0.722782
Target:  5'- uGCCGGUAUGCGGcGCUGCGgacCCUGg -3'
miRNA:   3'- uUGGUCAUGUGCC-UGGCGCac-GGGCa -5'
23764 5' -59 NC_005261.1 + 118366 0.73 0.378218
Target:  5'- cGGCCGGgcGCugGGGCgCGCG-GCCCGa -3'
miRNA:   3'- -UUGGUCa-UGugCCUG-GCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 117910 0.66 0.7707
Target:  5'- uGAgCGGcUGCGCGGgaacgaaggccgGCUGCG-GCCCGUg -3'
miRNA:   3'- -UUgGUC-AUGUGCC------------UGGCGCaCGGGCA- -5'
23764 5' -59 NC_005261.1 + 117711 0.66 0.751834
Target:  5'- aGGCCGGcGCGCGGGCCcgcaaGCG-GCCgCGc -3'
miRNA:   3'- -UUGGUCaUGUGCCUGG-----CGCaCGG-GCa -5'
23764 5' -59 NC_005261.1 + 116157 0.66 0.751834
Target:  5'- gAAgCAGcGCGCGGucgcgGCCGCGUcCCCGa -3'
miRNA:   3'- -UUgGUCaUGUGCC-----UGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 115410 0.66 0.761324
Target:  5'- cGACCGcGggcgGCAgccgGGGCCGCG-GCCCGa -3'
miRNA:   3'- -UUGGU-Ca---UGUg---CCUGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 114692 0.66 0.732554
Target:  5'- -uUgAGUacaGCGCGGACCGCuUGCUCGc -3'
miRNA:   3'- uuGgUCA---UGUGCCUGGCGcACGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.