miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23764 5' -59 NC_005261.1 + 111535 0.67 0.703015
Target:  5'- cAGCgGGcgACgcguucauGCGGACCGCcUGCCCGg -3'
miRNA:   3'- -UUGgUCa-UG--------UGCCUGGCGcACGGGCa -5'
23764 5' -59 NC_005261.1 + 108877 0.69 0.551847
Target:  5'- cAGCgGGUGgACGacGGCCGCGcUGCCCGc -3'
miRNA:   3'- -UUGgUCAUgUGC--CUGGCGC-ACGGGCa -5'
23764 5' -59 NC_005261.1 + 108421 0.72 0.403198
Target:  5'- cGCCugcGUGCACGGcaACCGCGU-CCCGg -3'
miRNA:   3'- uUGGu--CAUGUGCC--UGGCGCAcGGGCa -5'
23764 5' -59 NC_005261.1 + 108302 0.66 0.729631
Target:  5'- cGCC--UGCACGGcgucccagacggccGCCGCGUGCuCCGc -3'
miRNA:   3'- uUGGucAUGUGCC--------------UGGCGCACG-GGCa -5'
23764 5' -59 NC_005261.1 + 108173 0.72 0.386428
Target:  5'- cGCCAGgGCGCGcGGCCGCG-GCuCCGg -3'
miRNA:   3'- uUGGUCaUGUGC-CUGGCGCaCG-GGCa -5'
23764 5' -59 NC_005261.1 + 106027 0.73 0.370126
Target:  5'- gGACCGGagGCACGccACCGCGcUGCCCGg -3'
miRNA:   3'- -UUGGUCa-UGUGCc-UGGCGC-ACGGGCa -5'
23764 5' -59 NC_005261.1 + 105216 0.69 0.581835
Target:  5'- -cCCGccGCGCGGGCCGCG-GCCgCGg -3'
miRNA:   3'- uuGGUcaUGUGCCUGGCGCaCGG-GCa -5'
23764 5' -59 NC_005261.1 + 103782 0.7 0.531134
Target:  5'- -cCCAGgcCGCGGGCCGUcuucgguGUGCgCCGUu -3'
miRNA:   3'- uuGGUCauGUGCCUGGCG-------CACG-GGCA- -5'
23764 5' -59 NC_005261.1 + 103412 0.7 0.532114
Target:  5'- -uCCAGcuccGCGCGGGCCGCG-GCCaCGc -3'
miRNA:   3'- uuGGUCa---UGUGCCUGGCGCaCGG-GCa -5'
23764 5' -59 NC_005261.1 + 101957 0.66 0.751834
Target:  5'- gAGCCGGgGCACGG-CCGCcagGUcGCCCu- -3'
miRNA:   3'- -UUGGUCaUGUGCCuGGCG---CA-CGGGca -5'
23764 5' -59 NC_005261.1 + 101826 0.7 0.54195
Target:  5'- -uCCAGcGCGCGGcugaucuccGCCGCGcGCCCGc -3'
miRNA:   3'- uuGGUCaUGUGCC---------UGGCGCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 100685 0.67 0.693039
Target:  5'- cGCgAGUGCAcCGcGGCCGCGgcgcgcgccGCCCGa -3'
miRNA:   3'- uUGgUCAUGU-GC-CUGGCGCa--------CGGGCa -5'
23764 5' -59 NC_005261.1 + 99659 0.66 0.742242
Target:  5'- cGCCAGcACGCuGACCGuCGUcagcgcgcuGCCCGg -3'
miRNA:   3'- uUGGUCaUGUGcCUGGC-GCA---------CGGGCa -5'
23764 5' -59 NC_005261.1 + 98702 0.71 0.47463
Target:  5'- cGGCCGGaGCugGGGCCGgG-GUCCGg -3'
miRNA:   3'- -UUGGUCaUGugCCUGGCgCaCGGGCa -5'
23764 5' -59 NC_005261.1 + 97098 0.67 0.703015
Target:  5'- gGGCCGGggGCGCcagccGGGCCGCG-GCCgGa -3'
miRNA:   3'- -UUGGUCa-UGUG-----CCUGGCGCaCGGgCa -5'
23764 5' -59 NC_005261.1 + 97009 0.67 0.672946
Target:  5'- cGCCAuUGgGCGGGCCGuCGggcgcGCCCGg -3'
miRNA:   3'- uUGGUcAUgUGCCUGGC-GCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 95700 0.67 0.712932
Target:  5'- cGCgAGUaugcGCGCGGGCuCGCGcucggGCCCGc -3'
miRNA:   3'- uUGgUCA----UGUGCCUG-GCGCa----CGGGCa -5'
23764 5' -59 NC_005261.1 + 95609 0.67 0.693039
Target:  5'- cGGCCGGcUGC-UGGACCGCGcgGUCCa- -3'
miRNA:   3'- -UUGGUC-AUGuGCCUGGCGCa-CGGGca -5'
23764 5' -59 NC_005261.1 + 94180 0.68 0.612143
Target:  5'- cACCAGcgugGCGCGGugCGCG-GCCaggaaGUg -3'
miRNA:   3'- uUGGUCa---UGUGCCugGCGCaCGGg----CA- -5'
23764 5' -59 NC_005261.1 + 93666 0.7 0.522342
Target:  5'- cACCGGUcCGCGGGCgGCG-GCgCCGg -3'
miRNA:   3'- uUGGUCAuGUGCCUGgCGCaCG-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.