Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23764 | 5' | -59 | NC_005261.1 | + | 84851 | 0.7 | 0.532114 |
Target: 5'- cACCAc--CGCGGGCCGCGUGgCCa- -3' miRNA: 3'- uUGGUcauGUGCCUGGCGCACgGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 103412 | 0.7 | 0.532114 |
Target: 5'- -uCCAGcuccGCGCGGGCCGCG-GCCaCGc -3' miRNA: 3'- uuGGUCa---UGUGCCUGGCGCaCGG-GCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 108421 | 0.72 | 0.403198 |
Target: 5'- cGCCugcGUGCACGGcaACCGCGU-CCCGg -3' miRNA: 3'- uUGGu--CAUGUGCC--UGGCGCAcGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 121177 | 0.72 | 0.403198 |
Target: 5'- cGCuCGGUGCACgGGGCCGgGgccggGCCCGg -3' miRNA: 3'- uUG-GUCAUGUG-CCUGGCgCa----CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 108173 | 0.72 | 0.386428 |
Target: 5'- cGCCAGgGCGCGcGGCCGCG-GCuCCGg -3' miRNA: 3'- uUGGUCaUGUGC-CUGGCGCaCG-GGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 118366 | 0.73 | 0.378218 |
Target: 5'- cGGCCGGgcGCugGGGCgCGCG-GCCCGa -3' miRNA: 3'- -UUGGUCa-UGugCCUG-GCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 106027 | 0.73 | 0.370126 |
Target: 5'- gGACCGGagGCACGccACCGCGcUGCCCGg -3' miRNA: 3'- -UUGGUCa-UGUGCc-UGGCGC-ACGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 33595 | 0.73 | 0.362152 |
Target: 5'- cACCAGgggcggcgccgGCGCGGGCgGCGggGCCCGg -3' miRNA: 3'- uUGGUCa----------UGUGCCUGgCGCa-CGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 23233 | 0.73 | 0.338957 |
Target: 5'- aAGCCGGUGCAgCGGGCCGgCcUGCUCGg -3' miRNA: 3'- -UUGGUCAUGU-GCCUGGC-GcACGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 34454 | 0.74 | 0.309738 |
Target: 5'- cGCCGGgGCACGGGCCGgGgGcCCCGUa -3' miRNA: 3'- uUGGUCaUGUGCCUGGCgCaC-GGGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 30020 | 0.72 | 0.411753 |
Target: 5'- -cCCGGUGCucucggcugcaGCGGGCCGCG-GCCUGc -3' miRNA: 3'- uuGGUCAUG-----------UGCCUGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 3590 | 0.72 | 0.426553 |
Target: 5'- cACCGcGU-CGCGGGCCGCGccaagcagcucagcUGCCCGg -3' miRNA: 3'- uUGGU-CAuGUGCCUGGCGC--------------ACGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 103782 | 0.7 | 0.531134 |
Target: 5'- -cCCAGgcCGCGGGCCGUcuucgguGUGCgCCGUu -3' miRNA: 3'- uuGGUCauGUGCCUGGCG-------CACG-GGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 49063 | 0.7 | 0.528197 |
Target: 5'- cGGCCAGguucgcgaagcggGCACGcGCCGCGgGCCCGc -3' miRNA: 3'- -UUGGUCa------------UGUGCcUGGCGCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 93666 | 0.7 | 0.522342 |
Target: 5'- cACCGGUcCGCGGGCgGCG-GCgCCGg -3' miRNA: 3'- uUGGUCAuGUGCCUGgCGCaCG-GGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 34410 | 0.7 | 0.493468 |
Target: 5'- cGACCGGguggcGCGCGGcCCGCGccUGCCCc- -3' miRNA: 3'- -UUGGUCa----UGUGCCuGGCGC--ACGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 98702 | 0.71 | 0.47463 |
Target: 5'- cGGCCGGaGCugGGGCCGgG-GUCCGg -3' miRNA: 3'- -UUGGUCaUGugCCUGGCgCaCGGGCa -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 60714 | 0.71 | 0.464423 |
Target: 5'- --gCGGcGCACGGcggugccACCGCGUGCUCGUg -3' miRNA: 3'- uugGUCaUGUGCC-------UGGCGCACGGGCA- -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 126194 | 0.71 | 0.456158 |
Target: 5'- cGACCAGccccGCGCGGACCaGCGgcaGCCCc- -3' miRNA: 3'- -UUGGUCa---UGUGCCUGG-CGCa--CGGGca -5' |
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23764 | 5' | -59 | NC_005261.1 | + | 13039 | 0.72 | 0.429197 |
Target: 5'- gAGCCAGgGCGCgGGGCCGCGcgcGCCCc- -3' miRNA: 3'- -UUGGUCaUGUG-CCUGGCGCa--CGGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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