miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 3' -58.5 NC_005261.1 + 109799 0.66 0.747038
Target:  5'- uGCUGCgacgGCCGGcGcCGCUUCCGccGCGg -3'
miRNA:   3'- uCGAUGag--CGGCCuC-GCGAAGGU--CGU- -5'
23765 3' -58.5 NC_005261.1 + 58747 0.66 0.747038
Target:  5'- cGCUguuaagaaACUcccgCGCCGaGAGCGCccCCAGCGc -3'
miRNA:   3'- uCGA--------UGA----GCGGC-CUCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 62068 0.66 0.737301
Target:  5'- cAGCUGCcccgccUCGCgCGaGGCGCUgcCCAGCu -3'
miRNA:   3'- -UCGAUG------AGCG-GCcUCGCGAa-GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 118347 0.66 0.737301
Target:  5'- gGGCUGCUCcucggccucucgGCCGG-GCGCUggggcgCgCGGCc -3'
miRNA:   3'- -UCGAUGAG------------CGGCCuCGCGAa-----G-GUCGu -5'
23765 3' -58.5 NC_005261.1 + 97845 0.66 0.737301
Target:  5'- gGGCgGCgggCGCCgccgcGGcAGCGCggCCGGCAu -3'
miRNA:   3'- -UCGaUGa--GCGG-----CC-UCGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 17794 0.66 0.736322
Target:  5'- cGCcaacauCUCGCCGGucucgcgcaugcgGGCGUUgcacUCCAGCGa -3'
miRNA:   3'- uCGau----GAGCGGCC-------------UCGCGA----AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 75494 0.67 0.727472
Target:  5'- cGCUACgagCG-CGGGGCGCUggaGGCGc -3'
miRNA:   3'- uCGAUGa--GCgGCCUCGCGAaggUCGU- -5'
23765 3' -58.5 NC_005261.1 + 75738 0.67 0.727472
Target:  5'- cGCUGCUC-CUGGuGCGCcgCCuGCu -3'
miRNA:   3'- uCGAUGAGcGGCCuCGCGaaGGuCGu -5'
23765 3' -58.5 NC_005261.1 + 18425 0.67 0.727472
Target:  5'- cAGCgcagacgucCUCGCCGGgcAGCGCgUUCCccguGCAg -3'
miRNA:   3'- -UCGau-------GAGCGGCC--UCGCG-AAGGu---CGU- -5'
23765 3' -58.5 NC_005261.1 + 2123 0.67 0.727472
Target:  5'- -cCUGCgCGCC-GAGCGCgcucacgUCCGGCGc -3'
miRNA:   3'- ucGAUGaGCGGcCUCGCGa------AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 67396 0.67 0.727472
Target:  5'- cGCcGCgcgCGCCaGGAccaGCGCcgCCAGCAg -3'
miRNA:   3'- uCGaUGa--GCGG-CCU---CGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 118117 0.67 0.727472
Target:  5'- cGCUGCgcCGCCGGcucGCGCcgcucggCCGGCu -3'
miRNA:   3'- uCGAUGa-GCGGCCu--CGCGaa-----GGUCGu -5'
23765 3' -58.5 NC_005261.1 + 66550 0.67 0.71756
Target:  5'- cAGCUGgUCgGCCGugccGCGCUcgaacgagUCCAGCAc -3'
miRNA:   3'- -UCGAUgAG-CGGCcu--CGCGA--------AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 133807 0.67 0.71756
Target:  5'- gGGCUGCUCGaCGGcgacgaGGCGCUgCgCGGCc -3'
miRNA:   3'- -UCGAUGAGCgGCC------UCGCGAaG-GUCGu -5'
23765 3' -58.5 NC_005261.1 + 104311 0.67 0.71756
Target:  5'- cGCUcaaagagCGCgCGGAcGCGCgcgUCCAGCGg -3'
miRNA:   3'- uCGAuga----GCG-GCCU-CGCGa--AGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 124591 0.67 0.714572
Target:  5'- cGCUGaUCGuuGGgcggcgugcggcauAGCGCgUCCAGCGg -3'
miRNA:   3'- uCGAUgAGCggCC--------------UCGCGaAGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 75545 0.67 0.711578
Target:  5'- cGGCUGCgcguccugccggccaUCcCCGGGGCGCUgggCGGCGg -3'
miRNA:   3'- -UCGAUG---------------AGcGGCCUCGCGAag-GUCGU- -5'
23765 3' -58.5 NC_005261.1 + 137008 0.67 0.707576
Target:  5'- --gUGCg-GCCGGAgaGCGCggCCAGCAg -3'
miRNA:   3'- ucgAUGagCGGCCU--CGCGaaGGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 58933 0.67 0.697527
Target:  5'- cGCgcacGC-CGcCCGGaAGCGCUcggCCAGCAg -3'
miRNA:   3'- uCGa---UGaGC-GGCC-UCGCGAa--GGUCGU- -5'
23765 3' -58.5 NC_005261.1 + 74047 0.67 0.697527
Target:  5'- cAGCg---CGCCGGGGgGCUg-CGGCAg -3'
miRNA:   3'- -UCGaugaGCGGCCUCgCGAagGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.