miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 132166 0.68 0.929124
Target:  5'- cGCcGCUGCAggcAGCGCGGgCGggGGCC-CGc -3'
miRNA:   3'- -CGaUGAUGU---UCGCGCU-GUa-CCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 131420 0.67 0.956486
Target:  5'- cGCUGCcgGCAgcGGCGcCGGCGccccccuUGcGCCGCGc -3'
miRNA:   3'- -CGAUGa-UGU--UCGC-GCUGU-------AC-CGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 131187 0.72 0.751546
Target:  5'- gGCUACgcccGCGgcgcggucgccgccGGCGCGcccgcguACGUGGCCGCGc -3'
miRNA:   3'- -CGAUGa---UGU--------------UCGCGC-------UGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 131066 0.66 0.976098
Target:  5'- cCUGCagGCcguGCGgGACugccUGGCCACGu -3'
miRNA:   3'- cGAUGa-UGuu-CGCgCUGu---ACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 130756 0.67 0.952869
Target:  5'- cGCUGCUgguaaccacggaGCAgcuGGCGCcccGCGcUGGCCGCa -3'
miRNA:   3'- -CGAUGA------------UGU---UCGCGc--UGU-ACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 130315 0.7 0.862897
Target:  5'- aGCcGCUGC-AGCGCcaugGACGgcccGGCCGCGc -3'
miRNA:   3'- -CGaUGAUGuUCGCG----CUGUa---CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 129728 0.71 0.829959
Target:  5'- gGCUGCagcgGCAGG-GCGGCggGGCC-CGg -3'
miRNA:   3'- -CGAUGa---UGUUCgCGCUGuaCCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 129184 0.67 0.956876
Target:  5'- uGCUGCcGCAGGCcaGCG-CGUGGCgCAg- -3'
miRNA:   3'- -CGAUGaUGUUCG--CGCuGUACCG-GUgc -5'
23765 5' -52.6 NC_005261.1 + 128823 0.74 0.652653
Target:  5'- cGCUGCggcugACGcucGCGCGGC-UGGCCGCc -3'
miRNA:   3'- -CGAUGa----UGUu--CGCGCUGuACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 127785 0.73 0.732508
Target:  5'- gGCUGCU-CGAGCggcgggccggcgccGCGGCGgcgGGCCGCu -3'
miRNA:   3'- -CGAUGAuGUUCG--------------CGCUGUa--CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 127714 0.66 0.9726
Target:  5'- aGCUGCgcgugGCcugccugguagcggGAGCuugGCGGCGggagcgGGCCGCGg -3'
miRNA:   3'- -CGAUGa----UG--------------UUCG---CGCUGUa-----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 126574 0.69 0.888137
Target:  5'- uGCUGCaGCAGcGCGCGGCAguagcccaaaaacaGGcCCGCGu -3'
miRNA:   3'- -CGAUGaUGUU-CGCGCUGUa-------------CC-GGUGC- -5'
23765 5' -52.6 NC_005261.1 + 125763 0.67 0.952869
Target:  5'- gGCUGCcGCGGGCuCGGCuaaGGCCAa- -3'
miRNA:   3'- -CGAUGaUGUUCGcGCUGua-CCGGUgc -5'
23765 5' -52.6 NC_005261.1 + 123164 0.67 0.960645
Target:  5'- --gGCgggGCGGGCGCGcggGCGUGGUgGCu -3'
miRNA:   3'- cgaUGa--UGUUCGCGC---UGUACCGgUGc -5'
23765 5' -52.6 NC_005261.1 + 123001 0.66 0.967485
Target:  5'- gGCcACUACGGcCGCGGCcGUGGCgucCGCGa -3'
miRNA:   3'- -CGaUGAUGUUcGCGCUG-UACCG---GUGC- -5'
23765 5' -52.6 NC_005261.1 + 122625 0.69 0.888137
Target:  5'- uGCUugaACgGCGAGCGCGAggcccggcgcgcguaCGUGGgCGCGa -3'
miRNA:   3'- -CGA---UGaUGUUCGCGCU---------------GUACCgGUGC- -5'
23765 5' -52.6 NC_005261.1 + 122302 0.74 0.673669
Target:  5'- cGCUGCcGCAGGCGaCGcCcgGGCCGgCGg -3'
miRNA:   3'- -CGAUGaUGUUCGC-GCuGuaCCGGU-GC- -5'
23765 5' -52.6 NC_005261.1 + 121747 0.69 0.880993
Target:  5'- gGCU-CUGaguggaguccgagccCGAGCGCGGugggGUGGCCGCGg -3'
miRNA:   3'- -CGAuGAU---------------GUUCGCGCUg---UACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 121430 0.66 0.970569
Target:  5'- cGCUACgggGC-GGCGgGGCGggcauggGGCCGuCGa -3'
miRNA:   3'- -CGAUGa--UGuUCGCgCUGUa------CCGGU-GC- -5'
23765 5' -52.6 NC_005261.1 + 121398 0.66 0.973438
Target:  5'- gGCgcCUGCccGAGUGCGACGgcuGCCGCc -3'
miRNA:   3'- -CGauGAUG--UUCGCGCUGUac-CGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.