miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 121371 0.71 0.79397
Target:  5'- cGCgUACUGCAGGCGCccCGcGGCgGCGg -3'
miRNA:   3'- -CG-AUGAUGUUCGCGcuGUaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 120430 0.67 0.944121
Target:  5'- gGCUGgUgaACAuGCGCGGCGUGcGCCuGCu -3'
miRNA:   3'- -CGAUgA--UGUuCGCGCUGUAC-CGG-UGc -5'
23765 5' -52.6 NC_005261.1 + 120356 0.68 0.929124
Target:  5'- cCUGCgcuggACGGuGCGCGACGgcGCCGCGc -3'
miRNA:   3'- cGAUGa----UGUU-CGCGCUGUacCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 119618 0.67 0.948619
Target:  5'- cGCUG-UACGuGCacuGCGGCGUGGCCgACa -3'
miRNA:   3'- -CGAUgAUGUuCG---CGCUGUACCGG-UGc -5'
23765 5' -52.6 NC_005261.1 + 119576 0.84 0.201338
Target:  5'- uGC-GCUGCGAGCGCGAgacCGUGGCCGCc -3'
miRNA:   3'- -CGaUGAUGUUCGCGCU---GUACCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 119226 0.66 0.970569
Target:  5'- cCUGCcgggGCGAGCGUGGCcgaucgcGGCCAUc -3'
miRNA:   3'- cGAUGa---UGUUCGCGCUGua-----CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 118923 0.77 0.487456
Target:  5'- gGC-GCcGCGGGCGCGGCGccgcgcggcUGGCCGCGg -3'
miRNA:   3'- -CGaUGaUGUUCGCGCUGU---------ACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 118885 0.67 0.960645
Target:  5'- gGCcACcGCGGGCGCGcugGUGGCCuGCGu -3'
miRNA:   3'- -CGaUGaUGUUCGCGCug-UACCGG-UGC- -5'
23765 5' -52.6 NC_005261.1 + 118842 0.66 0.964179
Target:  5'- cGCU-CUGC-GGCGCGGag-GGCgGCGc -3'
miRNA:   3'- -CGAuGAUGuUCGCGCUguaCCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 118783 0.67 0.948619
Target:  5'- --cGCUGCAgacGGCGCGcugAUGGCgCACGu -3'
miRNA:   3'- cgaUGAUGU---UCGCGCug-UACCG-GUGC- -5'
23765 5' -52.6 NC_005261.1 + 118689 0.7 0.8385
Target:  5'- cGCUGgcGCAcGCGCGGCGUGGUCcuGCu -3'
miRNA:   3'- -CGAUgaUGUuCGCGCUGUACCGG--UGc -5'
23765 5' -52.6 NC_005261.1 + 118213 0.73 0.684127
Target:  5'- cGCUGCgcgGGGCGCuGACGgccgcGGCCGCGg -3'
miRNA:   3'- -CGAUGaugUUCGCG-CUGUa----CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 118057 0.66 0.967485
Target:  5'- cGCUG--GCGGcCGCGGCAgcGGCCGCa -3'
miRNA:   3'- -CGAUgaUGUUcGCGCUGUa-CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 118019 0.68 0.929124
Target:  5'- cGCUGuCggacGCAcGCGgGGCccGGCCGCGa -3'
miRNA:   3'- -CGAU-Ga---UGUuCGCgCUGuaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 117956 0.81 0.299307
Target:  5'- cGCUGCUACGGGCGCGcucgcugcCAUGGgCGCGc -3'
miRNA:   3'- -CGAUGAUGUUCGCGCu-------GUACCgGUGC- -5'
23765 5' -52.6 NC_005261.1 + 117450 0.81 0.313863
Target:  5'- gGCUGCUGCAgaaGGUGCGGCAggucGGCgGCGa -3'
miRNA:   3'- -CGAUGAUGU---UCGCGCUGUa---CCGgUGC- -5'
23765 5' -52.6 NC_005261.1 + 115524 0.69 0.885308
Target:  5'- cCUGCUGCAccgAGCGCaGCAUcGGCgGCu -3'
miRNA:   3'- cGAUGAUGU---UCGCGcUGUA-CCGgUGc -5'
23765 5' -52.6 NC_005261.1 + 114344 0.74 0.673669
Target:  5'- --gGCU-CGAGCgGCG-CGUGGCCGCGg -3'
miRNA:   3'- cgaUGAuGUUCG-CGCuGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 114257 0.67 0.94818
Target:  5'- uGCUGCUcuuuaaaaacgacGCGguGGCGCGcGCG-GGCUACGu -3'
miRNA:   3'- -CGAUGA-------------UGU--UCGCGC-UGUaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 113893 0.68 0.929124
Target:  5'- aGCggcgACgcgGCGGGCGCGA--UGGCCGa- -3'
miRNA:   3'- -CGa---UGa--UGUUCGCGCUguACCGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.