miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23765 5' -52.6 NC_005261.1 + 136744 0.66 0.970569
Target:  5'- cGCUGCUGCAAGC-CGuCgGUGGUgAgGa -3'
miRNA:   3'- -CGAUGAUGUUCGcGCuG-UACCGgUgC- -5'
23765 5' -52.6 NC_005261.1 + 38527 0.66 0.970569
Target:  5'- cGCUgGCUGCGcgcgccgggcacAGCGcCGGCGcgcGGCCAUGc -3'
miRNA:   3'- -CGA-UGAUGU------------UCGC-GCUGUa--CCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 28576 0.66 0.970569
Target:  5'- gGCcgagGCgcGCGAGCGcCGGCG-GGCCGCc -3'
miRNA:   3'- -CGa---UGa-UGUUCGC-GCUGUaCCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 119226 0.66 0.970569
Target:  5'- cCUGCcgggGCGAGCGUGGCcgaucgcGGCCAUc -3'
miRNA:   3'- cGAUGa---UGUUCGCGCUGua-----CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 121430 0.66 0.970569
Target:  5'- cGCUACgggGC-GGCGgGGCGggcauggGGCCGuCGa -3'
miRNA:   3'- -CGAUGa--UGuUCGCgCUGUa------CCGGU-GC- -5'
23765 5' -52.6 NC_005261.1 + 111041 0.66 0.970569
Target:  5'- aGCgagcGCUACAAGUccuGCGACGUGcCCGuCGu -3'
miRNA:   3'- -CGa---UGAUGUUCG---CGCUGUACcGGU-GC- -5'
23765 5' -52.6 NC_005261.1 + 69082 0.66 0.970569
Target:  5'- cCUGCUGuc-GCGCuggGGCAUGGCCAg- -3'
miRNA:   3'- cGAUGAUguuCGCG---CUGUACCGGUgc -5'
23765 5' -52.6 NC_005261.1 + 133944 0.66 0.970569
Target:  5'- cCUGCgcCAGGCGCGgcGCAUGuucggccuuuGCCGCa -3'
miRNA:   3'- cGAUGauGUUCGCGC--UGUAC----------CGGUGc -5'
23765 5' -52.6 NC_005261.1 + 38593 0.66 0.970569
Target:  5'- cCUGCUGgcGGCccGCGGCuggcggguguUGGCCGCGg -3'
miRNA:   3'- cGAUGAUguUCG--CGCUGu---------ACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 82161 0.66 0.970569
Target:  5'- cGCgcCaGCAAGCGCGGCGcGGaaggCGCGg -3'
miRNA:   3'- -CGauGaUGUUCGCGCUGUaCCg---GUGC- -5'
23765 5' -52.6 NC_005261.1 + 77197 0.66 0.967485
Target:  5'- uCUGCagGCGAGCGCGguguucccGC-UGGCCGgGg -3'
miRNA:   3'- cGAUGa-UGUUCGCGC--------UGuACCGGUgC- -5'
23765 5' -52.6 NC_005261.1 + 57838 0.66 0.967485
Target:  5'- -gUGCUccGCGGGCGCGggcgGCAaGGCCuCGg -3'
miRNA:   3'- cgAUGA--UGUUCGCGC----UGUaCCGGuGC- -5'
23765 5' -52.6 NC_005261.1 + 58554 0.66 0.967485
Target:  5'- gGCUcCUGC--GC-CGuCGUGGCCGCGa -3'
miRNA:   3'- -CGAuGAUGuuCGcGCuGUACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 4855 0.66 0.967485
Target:  5'- cGCaGCcuCAAGgGCGGC--GGCCACGa -3'
miRNA:   3'- -CGaUGauGUUCgCGCUGuaCCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 88445 0.66 0.967485
Target:  5'- cGCUGCUGgccgcgccgcgUGAGCGUGugGgcgGGCCGu- -3'
miRNA:   3'- -CGAUGAU-----------GUUCGCGCugUa--CCGGUgc -5'
23765 5' -52.6 NC_005261.1 + 97408 0.66 0.967485
Target:  5'- cGCggGCUugGCGGGCGCG-CcgGGCCuGCc -3'
miRNA:   3'- -CGa-UGA--UGUUCGCGCuGuaCCGG-UGc -5'
23765 5' -52.6 NC_005261.1 + 118057 0.66 0.967485
Target:  5'- cGCUG--GCGGcCGCGGCAgcGGCCGCa -3'
miRNA:   3'- -CGAUgaUGUUcGCGCUGUa-CCGGUGc -5'
23765 5' -52.6 NC_005261.1 + 73214 0.66 0.967485
Target:  5'- gGCgcCUcgAgGGGCGCGG--UGGCCGCGa -3'
miRNA:   3'- -CGauGA--UgUUCGCGCUguACCGGUGC- -5'
23765 5' -52.6 NC_005261.1 + 123001 0.66 0.967485
Target:  5'- gGCcACUACGGcCGCGGCcGUGGCgucCGCGa -3'
miRNA:   3'- -CGaUGAUGUUcGCGCUG-UACCG---GUGC- -5'
23765 5' -52.6 NC_005261.1 + 137050 0.66 0.967165
Target:  5'- gGCggACcgucgGCAGGCGCGGaggcgcgggcaccCAUGGCgGCGc -3'
miRNA:   3'- -CGa-UGa----UGUUCGCGCU-------------GUACCGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.