miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 45171 0.66 0.728849
Target:  5'- -uGCGAC-GCGUaccgcGCCGAGuguGAGGCCa -3'
miRNA:   3'- uuCGCUGaCGCAc----UGGCUC---CUCCGGc -5'
23766 3' -60 NC_005261.1 + 49201 0.66 0.728849
Target:  5'- cGGcCGACaGCGaGGgCG-GGAGGCCGg -3'
miRNA:   3'- uUC-GCUGaCGCaCUgGCuCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 110795 0.66 0.728849
Target:  5'- cGGGgGACgGCG-GG-CGAGGAGGCgGg -3'
miRNA:   3'- -UUCgCUGaCGCaCUgGCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 31694 0.66 0.728849
Target:  5'- cGGCGGCUGauCGUGAUCGAcgccguGGAccccgcgaacuGGCCGc -3'
miRNA:   3'- uUCGCUGAC--GCACUGGCU------CCU-----------CCGGC- -5'
23766 3' -60 NC_005261.1 + 135304 0.66 0.719107
Target:  5'- -cGCGACcgGCGUGucGCCcuGGGcGGCCGu -3'
miRNA:   3'- uuCGCUGa-CGCAC--UGGc-UCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 14749 0.66 0.719107
Target:  5'- gGGGCGAUcgGCGccgcGCCGcgacaGGGGGGCCGc -3'
miRNA:   3'- -UUCGCUGa-CGCac--UGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 88179 0.66 0.709293
Target:  5'- gGGGCGACgccgGCGgcgccGgCGAGGcGGGCCGc -3'
miRNA:   3'- -UUCGCUGa---CGCac---UgGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 52731 0.66 0.709293
Target:  5'- -uGCGGCgccgcgGCGcGAUCGGGGAaguGGCCc -3'
miRNA:   3'- uuCGCUGa-----CGCaCUGGCUCCU---CCGGc -5'
23766 3' -60 NC_005261.1 + 39358 0.66 0.709293
Target:  5'- cGGCGGCaGCcgccucaucgGcGGCCGGGGAGGgCGg -3'
miRNA:   3'- uUCGCUGaCG----------CaCUGGCUCCUCCgGC- -5'
23766 3' -60 NC_005261.1 + 32983 0.66 0.709293
Target:  5'- gGAGgGACcGCG-GAg-GAGGGGGCCGa -3'
miRNA:   3'- -UUCgCUGaCGCaCUggCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 56135 0.66 0.709293
Target:  5'- aGGGCGGgggGCGcgGGCCGAGGGuGGCgGc -3'
miRNA:   3'- -UUCGCUga-CGCa-CUGGCUCCU-CCGgC- -5'
23766 3' -60 NC_005261.1 + 15958 0.66 0.709293
Target:  5'- gGGGCGAgUgGCG-GGCgGGGGAGGgcCCGg -3'
miRNA:   3'- -UUCGCUgA-CGCaCUGgCUCCUCC--GGC- -5'
23766 3' -60 NC_005261.1 + 6433 0.66 0.709293
Target:  5'- -cGCGAggGCG-GuCCGGGGGccGGCCGg -3'
miRNA:   3'- uuCGCUgaCGCaCuGGCUCCU--CCGGC- -5'
23766 3' -60 NC_005261.1 + 424 0.66 0.709293
Target:  5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3'
miRNA:   3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 138095 0.66 0.709293
Target:  5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3'
miRNA:   3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 110183 0.66 0.689483
Target:  5'- cGGGCGGCaguuccGCGacGuuGAGGAGGCCu -3'
miRNA:   3'- -UUCGCUGa-----CGCacUggCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 59660 0.66 0.689483
Target:  5'- cGGGCGACUGCG--GCCG-GGucGUCGa -3'
miRNA:   3'- -UUCGCUGACGCacUGGCuCCucCGGC- -5'
23766 3' -60 NC_005261.1 + 34682 0.66 0.689483
Target:  5'- cAGCGcGCUGCGUGACgGu--GGGCCc -3'
miRNA:   3'- uUCGC-UGACGCACUGgCuccUCCGGc -5'
23766 3' -60 NC_005261.1 + 94685 0.66 0.679505
Target:  5'- gAGGCG-CUGgccaccgaggaCGUGGCCGAgcuGGAGcGCCGc -3'
miRNA:   3'- -UUCGCuGAC-----------GCACUGGCU---CCUC-CGGC- -5'
23766 3' -60 NC_005261.1 + 97640 0.66 0.679505
Target:  5'- gGAGCGGgcGCGgguGCCGcaccuGGGGGGCCGg -3'
miRNA:   3'- -UUCGCUgaCGCac-UGGC-----UCCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.