Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23766 | 3' | -60 | NC_005261.1 | + | 35310 | 0.67 | 0.639294 |
Target: 5'- cGGGCcgGGCUGC----UCGGGGAGGCCGg -3' miRNA: 3'- -UUCG--CUGACGcacuGGCUCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 136612 | 0.67 | 0.629208 |
Target: 5'- gGAGCGGCgcGCGcGcGCCGAGGGcGGCgGg -3' miRNA: 3'- -UUCGCUGa-CGCaC-UGGCUCCU-CCGgC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 30466 | 0.67 | 0.619124 |
Target: 5'- gGGGgGACgGgGggGA-CGAGGAGGCCGg -3' miRNA: 3'- -UUCgCUGaCgCa-CUgGCUCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 125709 | 0.67 | 0.629208 |
Target: 5'- cGGCGACggccgccGCGggcucggcuggGGCCGccgcaAGGGGGCCGg -3' miRNA: 3'- uUCGCUGa------CGCa----------CUGGC-----UCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 49657 | 0.67 | 0.629208 |
Target: 5'- cGAGCGACUG-GUacACCGAGaccaugucGGGGCCGu -3' miRNA: 3'- -UUCGCUGACgCAc-UGGCUC--------CUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 32328 | 0.67 | 0.629208 |
Target: 5'- -cGCGGCgcccgGCGUGGCCuGGGAcgcggaccagGGCCc -3' miRNA: 3'- uuCGCUGa----CGCACUGGcUCCU----------CCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 128101 | 0.67 | 0.629208 |
Target: 5'- cGGGCGAgCgGCGcGGCgCGGGGucGGGCCGa -3' miRNA: 3'- -UUCGCU-GaCGCaCUG-GCUCC--UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 63797 | 0.67 | 0.639294 |
Target: 5'- -cGCGGCUGCGUGAgcgugaacCCGAcGccGCCGa -3' miRNA: 3'- uuCGCUGACGCACU--------GGCUcCucCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 127637 | 0.67 | 0.669488 |
Target: 5'- -cGCGACgGCGgcgGcGCCGGGGGGcGCgCGg -3' miRNA: 3'- uuCGCUGaCGCa--C-UGGCUCCUC-CG-GC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 98106 | 0.67 | 0.639294 |
Target: 5'- -cGCGGCgggcgGCGaGGCUGGGGAcGCCGc -3' miRNA: 3'- uuCGCUGa----CGCaCUGGCUCCUcCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 92608 | 0.67 | 0.649375 |
Target: 5'- -cGCGGC-GCGUG-CCGGGGccccGGGCgCGa -3' miRNA: 3'- uuCGCUGaCGCACuGGCUCC----UCCG-GC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 125788 | 0.67 | 0.639294 |
Target: 5'- aAGGCcGCUGCGaacggggcuugGGCCGGGGccgccgcgagcgGGGCCGg -3' miRNA: 3'- -UUCGcUGACGCa----------CUGGCUCC------------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 35719 | 0.67 | 0.639294 |
Target: 5'- cGGUGGCgGCcccGGCCGAGGccaccuGGGCCGa -3' miRNA: 3'- uUCGCUGaCGca-CUGGCUCC------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 90548 | 0.67 | 0.639294 |
Target: 5'- -cGCcGCcGCGc--CCGAGGAGGCCGu -3' miRNA: 3'- uuCGcUGaCGCacuGGCUCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 101475 | 0.68 | 0.585954 |
Target: 5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3' miRNA: 3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 137992 | 0.68 | 0.559066 |
Target: 5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3' miRNA: 3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 23776 | 0.68 | 0.568989 |
Target: 5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3' miRNA: 3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 23833 | 0.68 | 0.568989 |
Target: 5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3' miRNA: 3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 112669 | 0.68 | 0.568989 |
Target: 5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3' miRNA: 3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 74901 | 0.68 | 0.588959 |
Target: 5'- cGGCGGCccGCGcUGGCCGcgcggGGGAGGgCGa -3' miRNA: 3'- uUCGCUGa-CGC-ACUGGC-----UCCUCCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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