Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23766 | 3' | -60 | NC_005261.1 | + | 23833 | 0.68 | 0.568989 |
Target: 5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3' miRNA: 3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 112669 | 0.68 | 0.568989 |
Target: 5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3' miRNA: 3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 101475 | 0.68 | 0.585954 |
Target: 5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3' miRNA: 3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 74901 | 0.68 | 0.588959 |
Target: 5'- cGGCGGCccGCGcUGGCCGcgcggGGGAGGgCGa -3' miRNA: 3'- uUCGCUGa-CGC-ACUGGC-----UCCUCCgGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 1048 | 0.68 | 0.588959 |
Target: 5'- cGGGCGGCgGCGUuagcGGCgCGGGG-GGCUGg -3' miRNA: 3'- -UUCGCUGaCGCA----CUG-GCUCCuCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 104279 | 0.68 | 0.60905 |
Target: 5'- cGGCGGCUGCGcgGGCCucGcAGGCCc -3' miRNA: 3'- uUCGCUGACGCa-CUGGcuCcUCCGGc -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 16172 | 0.69 | 0.538394 |
Target: 5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3' miRNA: 3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 135186 | 0.69 | 0.538394 |
Target: 5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3' miRNA: 3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 27355 | 0.69 | 0.539373 |
Target: 5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3' miRNA: 3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 48337 | 0.7 | 0.445272 |
Target: 5'- gGGGCGcGCgcgGCGaGGCCGAGGAG-CCGg -3' miRNA: 3'- -UUCGC-UGa--CGCaCUGGCUCCUCcGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 30179 | 0.7 | 0.463396 |
Target: 5'- -cGCG-CUGCGc-GCCGAGGcGGCCGc -3' miRNA: 3'- uuCGCuGACGCacUGGCUCCuCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 62647 | 0.7 | 0.463396 |
Target: 5'- -cGCGAC-GcCGuUGACCGAgaaGGAGGCCa -3' miRNA: 3'- uuCGCUGaC-GC-ACUGGCU---CCUCCGGc -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 113895 | 0.7 | 0.49034 |
Target: 5'- cGGCGACgcgGCGggcgcgaUGGCCGAGGcagcGGGCgCGg -3' miRNA: 3'- uUCGCUGa--CGC-------ACUGGCUCC----UCCG-GC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 34296 | 0.7 | 0.491282 |
Target: 5'- cGGgGACgccgggaGCGaGACCGAcggGGAGGCCGa -3' miRNA: 3'- uUCgCUGa------CGCaCUGGCU---CCUCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 28832 | 0.7 | 0.491282 |
Target: 5'- gAGGCGGCcGCG--GCUGAGGcGGCCGu -3' miRNA: 3'- -UUCGCUGaCGCacUGGCUCCuCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 63729 | 0.7 | 0.491282 |
Target: 5'- uGAGCGGCgUGCGcaUGGCCGcGGcggcguAGGCCGc -3' miRNA: 3'- -UUCGCUG-ACGC--ACUGGCuCC------UCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 35764 | 0.71 | 0.418851 |
Target: 5'- aAGGCGGCU-CG-GGCCGAgacaGGAGGCCc -3' miRNA: 3'- -UUCGCUGAcGCaCUGGCU----CCUCCGGc -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 70865 | 0.71 | 0.410257 |
Target: 5'- aGGGCGGCcgccgugGCGUGGCCGGcGGugcacauGGCCGu -3' miRNA: 3'- -UUCGCUGa------CGCACUGGCU-CCu------CCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 2787 | 0.72 | 0.353286 |
Target: 5'- cGAGgGGCUGCcgccggcGGCCGGGaGGGGCCGg -3' miRNA: 3'- -UUCgCUGACGca-----CUGGCUC-CUCCGGC- -5' |
|||||||
23766 | 3' | -60 | NC_005261.1 | + | 24925 | 0.72 | 0.385146 |
Target: 5'- cGGCGGCUGCaGccGCCGAGGggcAGGCUGg -3' miRNA: 3'- uUCGCUGACG-CacUGGCUCC---UCCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home